RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ZNF575Q86XF7 245 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 CAMK2N2Q96S95 79 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 A0A0J9YXY3 114 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 ERC2-IT1O76042 136 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
LIMS1-203ENST00000393310 Q8TAT8 98 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 APCP25054 2843 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 IGHV3-16A0A0C4DH30 117 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 IGLV9-49A0A0B4J1Y8 123 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 LOC101927531A0A1B0GV80 90 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 HIGD2BQ4VC39 106 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 C11orf1Q9H5F2 150 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 FAM167A-AS1Q96KT0 104 aa5.62□□□□□ -1.51
LIMS1-203ENST00000393310 Q6ZTI0 123 aa5.61□□□□□ -1.51
LIMS1-203ENST00000393310 LINC01556Q5JQF7 62 aa5.61□□□□□ -1.51
LIMS1-203ENST00000393310 LUZP6Q538Z0 58 aa5.6□□□□□ -1.51
LIMS1-203ENST00000393310 HIGD2AQ9BW72 106 aa5.6□□□□□ -1.51
LIMS1-203ENST00000393310 A0A087WTM6 91 aa5.6□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV2-24A0A0C4DH68 120 aa5.6□□□□□ -1.51
LIMS1-203ENST00000393310 SND1-IT1Q9HBX3 110 aa5.6□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV2-40A0A087WW87 121 aaPredicted RBP5.59□□□□□ -1.51
LIMS1-203ENST00000393310 IBA57-AS1B1ANH7 110 aa5.59□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV2D-40P01614 121 aaPredicted RBP5.59□□□□□ -1.51
LIMS1-203ENST00000393310 COX7B2Q8TF08 81 aa5.59□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV1-39P01597 117 aa5.59□□□□□ -1.51
LIMS1-203ENST00000393310 IGKV1D-39P04432 117 aa5.59□□□□□ -1.51
LIMS1-203ENST00000393310 C14orf178Q8N769 122 aaPredicted RBP5.59□□□□□ -1.52
LIMS1-203ENST00000393310 E7EUB6 86 aa5.58□□□□□ -1.52
LIMS1-203ENST00000393310 IGLV2-11P01706 119 aa5.58□□□□□ -1.52
LIMS1-203ENST00000393310 SMCR5Q8TEV8 140 aa5.58□□□□□ -1.52
LIMS1-203ENST00000393310 DNAH7Q8WXX0 4024 aa5.58□□□□□ -1.52
LIMS1-203ENST00000393310 SMR3BP02814 79 aaPredicted RBP5.58□□□□□ -1.52
LIMS1-203ENST00000393310 MIR7-3HGQ8N6C7 128 aa5.58□□□□□ -1.52
LIMS1-203ENST00000393310 NDUFA1O15239 70 aa5.57□□□□□ -1.52
LIMS1-203ENST00000393310 LYPD5Q6UWN5 251 aa5.57□□□□□ -1.52
LIMS1-203ENST00000393310 DNAH3Q8TD57 4116 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 Q6ZRP5 223 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 PRR3P79522 188 aaKnown RBP5.56□□□□□ -1.52
LIMS1-203ENST00000393310 ADAMTSL4-AS1Q5T5F5 129 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 IGFL4Q6B9Z1 124 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 C1orf64Q8NEQ6 169 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 DNAH1Q9P2D7 4330 aa5.56□□□□□ -1.52
LIMS1-203ENST00000393310 LRBAP50851 2863 aa5.55□□□□□ -1.52
LIMS1-203ENST00000393310 DMBT1Q9UGM3 2413 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-203ENST00000393310 ELOF1P60002 83 aaKnown RBP5.55□□□□□ -1.52
LIMS1-203ENST00000393310 Q75L30 129 aa5.55□□□□□ -1.52
LIMS1-203ENST00000393310 Q8N9L7 120 aa5.55□□□□□ -1.52
LIMS1-203ENST00000393310 UTP20O75691 2785 aaKnown RBP5.54□□□□□ -1.52
LIMS1-203ENST00000393310 TRBV6-5A0A0K0K1A5 114 aa5.54□□□□□ -1.52
LIMS1-203ENST00000393310 TRBV6-1A0A0K0K1D8 114 aa5.54□□□□□ -1.52
LIMS1-203ENST00000393310 PRAC1Q96KF2 57 aa5.54□□□□□ -1.52
LIMS1-203ENST00000393310 CHCHD10Q8WYQ3 142 aaPredicted RBP5.54□□□□□ -1.52
LIMS1-203ENST00000393310 ETDCA0A1B0GVM5 59 aa5.53□□□□□ -1.52
LIMS1-203ENST00000393310 LINC01547P58512 204 aaPredicted RBP5.53□□□□□ -1.52
LIMS1-203ENST00000393310 CHTF8P0CG12 524 aa5.53□□□□□ -1.52
LIMS1-203ENST00000393310 DNAH10OSP0CZ25 163 aa5.52□□□□□ -1.53
LIMS1-203ENST00000393310 LINC00308Q8TCZ7 52 aa5.52□□□□□ -1.53
LIMS1-203ENST00000393310 CYSTM1Q9H1C7 97 aa5.52□□□□□ -1.53
LIMS1-203ENST00000393310 MUC4Q99102 2169 aa5.52□□□□□ -1.53
LIMS1-203ENST00000393310 MIR22HGQ0VDD5 57 aa5.51□□□□□ -1.53
LIMS1-203ENST00000393310 FBN2P35556 2912 aa5.51□□□□□ -1.53
LIMS1-203ENST00000393310 SLPIP03973 132 aa5.51□□□□□ -1.53
LIMS1-203ENST00000393310 A0A096LNJ9 63 aa5.5□□□□□ -1.53
LIMS1-203ENST00000393310 Q6ZQY7 126 aa5.5□□□□□ -1.53
LIMS1-203ENST00000393310 HRNRQ86YZ3 2850 aaPredicted RBP5.5□□□□□ -1.53
LIMS1-203ENST00000393310 KLK9Q2XQG4 91 aa5.5□□□□□ -1.53
LIMS1-203ENST00000393310 PSORS1C2Q9UIG4 136 aa5.5□□□□□ -1.53
LIMS1-203ENST00000393310 H0Y9P7 68 aa5.49□□□□□ -1.53
LIMS1-203ENST00000393310 IGLV4-69A0A075B6H9 119 aa5.49□□□□□ -1.53
LIMS1-203ENST00000393310 NTM-AS1Q6ZSK4 140 aa5.49□□□□□ -1.53
LIMS1-203ENST00000393310 Q8N814 137 aa5.49□□□□□ -1.53
LIMS1-203ENST00000393310 LINC01600Q96MT4 127 aa5.49□□□□□ -1.53
LIMS1-203ENST00000393310 ASB16-AS1Q495Z4 193 aa5.48□□□□□ -1.53
LIMS1-203ENST00000393310 CLPSL2Q6UWE3 100 aa5.48□□□□□ -1.53
LIMS1-203ENST00000393310 RPL37AP8A6NKH3 93 aa5.48□□□□□ -1.53
LIMS1-203ENST00000393310 IGLV10-54A0A075B6I4 117 aa5.46□□□□□ -1.53
LIMS1-203ENST00000393310 WFDC10BQ8IUB3 73 aa5.46□□□□□ -1.53
LIMS1-203ENST00000393310 KIF25-AS1Q9Y6Z4 181 aa5.46□□□□□ -1.53
LIMS1-203ENST00000393310 P0C879 139 aa5.46□□□□□ -1.54
LIMS1-203ENST00000393310 Q6ZR54 194 aa5.45□□□□□ -1.54
LIMS1-203ENST00000393310 COL7A1Q02388 2944 aa5.45□□□□□ -1.54
LIMS1-203ENST00000393310 RPL39P62891 51 aaKnown RBP5.45□□□□□ -1.54
LIMS1-203ENST00000393310 FAM229BQ4G0N7 80 aa5.45□□□□□ -1.54
LIMS1-203ENST00000393310 C1orf137Q5JT78 98 aa5.45□□□□□ -1.54
LIMS1-203ENST00000393310 PATE2Q6UY27 113 aa5.44□□□□□ -1.54
LIMS1-203ENST00000393310 RPL39LQ96EH5 51 aaKnown RBP5.44□□□□□ -1.54
LIMS1-203ENST00000393310 A0A1B0GU69 56 aa5.43□□□□□ -1.54
LIMS1-203ENST00000393310 A6NN06 94 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 UQCR11O14957 56 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 Q5VV11 94 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 C20orf203Q8NBC4 194 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 KLLNB2CW77 178 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 H3BPC8 53 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 SPINK6Q6UWN8 80 aa5.42□□□□□ -1.54
LIMS1-203ENST00000393310 MOBPQ13875 183 aa5.41□□□□□ -1.54
LIMS1-203ENST00000393310 SMIM11BQ8TCY0 68 aa5.41□□□□□ -1.54
LIMS1-203ENST00000393310 Q6ZQT0 140 aa5.41□□□□□ -1.54
LIMS1-203ENST00000393310 IGLV1-50A0A075B6I6 118 aa5.41□□□□□ -1.54
LIMS1-203ENST00000393310 IGKV4-1P06312 121 aa5.41□□□□□ -1.54
LIMS1-203ENST00000393310 CSAG1Q6PB30 78 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms