RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 KRTAP1-1Q07627 177 aa13.11□□□□□ -0.31
SHANK1-203ENST00000391813 ITPR3Q14573 2671 aa13.1□□□□□ -0.31
SHANK1-203ENST00000391813 PRR15Q8IV56 129 aa13.09□□□□□ -0.31
SHANK1-203ENST00000391813 EPM2AB3EWF7 344 aa13.08□□□□□ -0.32
SHANK1-203ENST00000391813 ATRQ13535 2644 aa13.07□□□□□ -0.32
SHANK1-203ENST00000391813 C16orf90A8MZG2 172 aa13.07□□□□□ -0.32
SHANK1-203ENST00000391813 PRR34Q9NV39 138 aa13.07□□□□□ -0.32
SHANK1-203ENST00000391813 Q8N377 158 aa13.07□□□□□ -0.32
SHANK1-203ENST00000391813 IGLV1-50A0A075B6I6 118 aa13.06□□□□□ -0.32
SHANK1-203ENST00000391813 CSNK1G2-AS1Q8NCQ2 148 aa13.06□□□□□ -0.32
SHANK1-203ENST00000391813 TRANK1O15050 2925 aa13.06□□□□□ -0.32
SHANK1-203ENST00000391813 SPANXA2-OT1Q8N9U9 137 aa13.05□□□□□ -0.32
SHANK1-203ENST00000391813 UQCR11O14957 56 aa13.05□□□□□ -0.32
SHANK1-203ENST00000391813 USP24Q9UPU5 2620 aa13.04□□□□□ -0.32
SHANK1-203ENST00000391813 K7EIL1 84 aa13.04□□□□□ -0.32
SHANK1-203ENST00000391813 RANBP2P49792 3224 aaKnown RBP13.04□□□□□ -0.32
SHANK1-203ENST00000391813 MAST4O15021 2626 aa13.03□□□□□ -0.32
SHANK1-203ENST00000391813 MRPL34Q9BQ48 92 aaKnown RBP13.03□□□□□ -0.32
SHANK1-203ENST00000391813 C19orf73Q9NVV2 129 aa13.03□□□□□ -0.32
SHANK1-203ENST00000391813 LCA10Q71F78 164 aa13.03□□□□□ -0.32
SHANK1-203ENST00000391813 NBDYA0A0U1RRE5 68 aa13.02□□□□□ -0.33
SHANK1-203ENST00000391813 IGFL1Q6UW32 110 aa13.01□□□□□ -0.33
SHANK1-203ENST00000391813 FAM229AH3BQW9 127 aa13□□□□□ -0.33
SHANK1-203ENST00000391813 Q1T7F1 81 aa13□□□□□ -0.33
SHANK1-203ENST00000391813 PHF5AQ7RTV0 110 aaKnown RBP12.99□□□□□ -0.33
SHANK1-203ENST00000391813 OCR1Q9BZK8 76 aa12.99□□□□□ -0.33
SHANK1-203ENST00000391813 DNAH10OSP0CZ25 163 aa12.97□□□□□ -0.33
SHANK1-203ENST00000391813 LINC00612Q8N6U2 182 aa12.97□□□□□ -0.33
SHANK1-203ENST00000391813 KRTAP10-3P60369 221 aa12.96□□□□□ -0.33
SHANK1-203ENST00000391813 LINC00313P59037 77 aa12.96□□□□□ -0.33
SHANK1-203ENST00000391813 Q5XG85 94 aa12.96□□□□□ -0.34
SHANK1-203ENST00000391813 KRTAP10-11P60412 298 aa12.96□□□□□ -0.34
SHANK1-203ENST00000391813 CENPEQ02224 2701 aa12.95□□□□□ -0.34
SHANK1-203ENST00000391813 LINC00588Q9Y4M8 146 aa12.94□□□□□ -0.34
SHANK1-203ENST00000391813 PLA2G2DQ9UNK4 145 aa12.93□□□□□ -0.34
SHANK1-203ENST00000391813 CDC42SE1Q9NRR8 79 aa12.92□□□□□ -0.34
SHANK1-203ENST00000391813 IGLV5-48A0A075B6I7 105 aa12.92□□□□□ -0.34
SHANK1-203ENST00000391813 A0A1W2PNM2 257 aa12.92□□□□□ -0.34
SHANK1-203ENST00000391813 GIG44P09565 113 aaPredicted RBP12.92□□□□□ -0.34
SHANK1-203ENST00000391813 C8orf17Q9NRJ1 99 aa12.92□□□□□ -0.34
SHANK1-203ENST00000391813 FAM168BA1KXE4 195 aa12.91□□□□□ -0.34
SHANK1-203ENST00000391813 C15orf56Q8N910 161 aa12.89□□□□□ -0.35
SHANK1-203ENST00000391813 TLX1NBP0CAT3 122 aa12.89□□□□□ -0.35
SHANK1-203ENST00000391813 MIR22HGQ0VDD5 57 aa12.89□□□□□ -0.35
SHANK1-203ENST00000391813 IGLV8-61A0A075B6I0 122 aa12.86□□□□□ -0.35
SHANK1-203ENST00000391813 FAM104AQ969W3 186 aa12.86□□□□□ -0.35
SHANK1-203ENST00000391813 SPACA4Q8TDM5 124 aa12.85□□□□□ -0.35
SHANK1-203ENST00000391813 A0A1B0GVX0 72 aa12.83□□□□□ -0.36
SHANK1-203ENST00000391813 FP248Q71RG6 208 aaPredicted RBP12.81□□□□□ -0.36
SHANK1-203ENST00000391813 CYSTM1Q9H1C7 97 aa12.81□□□□□ -0.36
SHANK1-203ENST00000391813 RTL8CO15255 209 aa12.81□□□□□ -0.36
SHANK1-203ENST00000391813 CHTF8P0CG12 524 aa12.78□□□□□ -0.36
SHANK1-203ENST00000391813 C5orf42Q9H799 3197 aa12.78□□□□□ -0.36
SHANK1-203ENST00000391813 SPINT4Q6UDR6 99 aa12.76□□□□□ -0.37
SHANK1-203ENST00000391813 SPRR4Q96PI1 79 aa12.74□□□□□ -0.37
SHANK1-203ENST00000391813 TEP1Q99973 2627 aaKnown RBP12.71□□□□□ -0.37
SHANK1-203ENST00000391813 UNC79Q9P2D8 2635 aa12.71□□□□□ -0.38
SHANK1-203ENST00000391813 DSCR10P59022 87 aa12.7□□□□□ -0.38
SHANK1-203ENST00000391813 SSBP3-AS1Q7Z2R9 100 aa12.7□□□□□ -0.38
SHANK1-203ENST00000391813 A0A0G2JQZ4 141 aa12.69□□□□□ -0.38
SHANK1-203ENST00000391813 A0A1W2PNN7 141 aa12.69□□□□□ -0.38
SHANK1-203ENST00000391813 Q75L30 129 aa12.69□□□□□ -0.38
SHANK1-203ENST00000391813 BAHCC1Q9P281 2608 aa12.69□□□□□ -0.38
SHANK1-203ENST00000391813 SETXQ7Z333 2677 aaKnown RBP12.68□□□□□ -0.38
SHANK1-203ENST00000391813 IGLV5-37A0A075B6J1 123 aa12.68□□□□□ -0.38
SHANK1-203ENST00000391813 MKI67P46013 3256 aaKnown RBP12.67□□□□□ -0.38
SHANK1-203ENST00000391813 RBM12B-AS1Q9P1G2 102 aa12.67□□□□□ -0.38
SHANK1-203ENST00000391813 IGSF10Q6WRI0 2623 aa12.66□□□□□ -0.38
SHANK1-203ENST00000391813 IGLV7-46A0A075B6I9 117 aa12.66□□□□□ -0.38
SHANK1-203ENST00000391813 A0A0C4DFX4 3053 aa12.65□□□□□ -0.38
SHANK1-203ENST00000391813 BPTFQ12830 3046 aa12.64□□□□□ -0.39
SHANK1-203ENST00000391813 PLA2G1BP04054 148 aaKnown RBP12.64□□□□□ -0.39
SHANK1-203ENST00000391813 FAM229BQ4G0N7 80 aa12.63□□□□□ -0.39
SHANK1-203ENST00000391813 Q96NJ1 140 aa12.63□□□□□ -0.39
SHANK1-203ENST00000391813 LAMA3Q16787 3333 aa12.63□□□□□ -0.39
SHANK1-203ENST00000391813 Q8N9P0 234 aaPredicted RBP12.62□□□□□ -0.39
SHANK1-203ENST00000391813 OXTP01178 125 aa12.62□□□□□ -0.39
SHANK1-203ENST00000391813 STAB1Q9NY15 2570 aa12.61□□□□□ -0.39
SHANK1-203ENST00000391813 MGAQ8IWI9 3026 aa12.6□□□□□ -0.39
SHANK1-203ENST00000391813 TYMSOSQ8TAI1 123 aa12.6□□□□□ -0.39
SHANK1-203ENST00000391813 ZNF861PO60384 105 aa12.58□□□□□ -0.4
SHANK1-203ENST00000391813 APLNQ9ULZ1 77 aa12.58□□□□□ -0.4
SHANK1-203ENST00000391813 C9orf163Q8N9P6 203 aa12.57□□□□□ -0.4
SHANK1-203ENST00000391813 CR1P17927 2039 aa12.56□□□□□ -0.4
SHANK1-203ENST00000391813 BRCA2P51587 3418 aa12.56□□□□□ -0.4
SHANK1-203ENST00000391813 LINC01558Q9Y6Z2 57 aa12.56□□□□□ -0.4
SHANK1-203ENST00000391813 PRR26Q8N8Z3 221 aa12.55□□□□□ -0.4
SHANK1-203ENST00000391813 COL6A5A8TX70 2615 aa12.55□□□□□ -0.4
SHANK1-203ENST00000391813 LAMA2P24043 3122 aaKnown RBP12.54□□□□□ -0.4
SHANK1-203ENST00000391813 CHD6Q8TD26 2715 aa12.54□□□□□ -0.4
SHANK1-203ENST00000391813 DSPP15924 2871 aaKnown RBP12.53□□□□□ -0.4
SHANK1-203ENST00000391813 A0A087WTM6 91 aa12.53□□□□□ -0.4
SHANK1-203ENST00000391813 CRIPTQ9P021 101 aa12.53□□□□□ -0.4
SHANK1-203ENST00000391813 CNBPP62633 177 aaKnown RBP12.52□□□□□ -0.41
SHANK1-203ENST00000391813 AKAP13Q12802 2813 aa12.51□□□□□ -0.41
SHANK1-203ENST00000391813 Q5VV11 94 aa12.49□□□□□ -0.41
SHANK1-203ENST00000391813 LINC01554Q52M75 96 aa12.48□□□□□ -0.41
SHANK1-203ENST00000391813 TEX15Q9BXT5 2789 aa12.44□□□□□ -0.42
SHANK1-203ENST00000391813 Q8NDZ9 215 aa12.43□□□□□ -0.42
SHANK1-203ENST00000391813 J3QL48 77 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms