RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FASNP49327 2511 aaKnown RBP9.57□□□□□ -0.88
RTF1-201ENST00000389629 C1orf64Q8NEQ6 169 aa9.56□□□□□ -0.88
RTF1-201ENST00000389629 Q9BRP9 147 aa9.56□□□□□ -0.88
RTF1-201ENST00000389629 GCN1Q92616 2671 aaKnown RBP9.56□□□□□ -0.88
RTF1-201ENST00000389629 LINC00167Q96N53 147 aa9.56□□□□□ -0.88
RTF1-201ENST00000389629 hDV103S1A0JD37 113 aa9.55□□□□□ -0.88
RTF1-201ENST00000389629 VPREB1P12018 145 aa9.55□□□□□ -0.88
RTF1-201ENST00000389629 Q8NBF4 154 aa9.55□□□□□ -0.88
RTF1-201ENST00000389629 TRBV7-4A0A0J9YYF1 115 aa9.55□□□□□ -0.88
RTF1-201ENST00000389629 ITPR3Q14573 2671 aa9.54□□□□□ -0.88
RTF1-201ENST00000389629 ERC2-IT1O76042 136 aa9.54□□□□□ -0.88
RTF1-201ENST00000389629 DMDP11532 3685 aa9.53□□□□□ -0.88
RTF1-201ENST00000389629 NBEAL2Q6ZNJ1 2754 aa9.53□□□□□ -0.88
RTF1-201ENST00000389629 K7EQZ3 153 aa9.53□□□□□ -0.88
RTF1-201ENST00000389629 LIMD2Q9BT23 127 aa9.52□□□□□ -0.89
RTF1-201ENST00000389629 COL12A1Q99715 3063 aa9.52□□□□□ -0.89
RTF1-201ENST00000389629 RPL37AP61513 92 aaKnown RBP9.51□□□□□ -0.89
RTF1-201ENST00000389629 Q6ZRP5 223 aa9.51□□□□□ -0.89
RTF1-201ENST00000389629 LINC00528Q8N1L1 170 aa9.5□□□□□ -0.89
RTF1-201ENST00000389629 Q8NAQ8 132 aa9.5□□□□□ -0.89
RTF1-201ENST00000389629 GVQW2A0A096LPI5 108 aaPredicted RBP9.5□□□□□ -0.89
RTF1-201ENST00000389629 IGHV6-1A0A0B4J1U7 121 aa9.49□□□□□ -0.89
RTF1-201ENST00000389629 Q6ZRX8 168 aa9.49□□□□□ -0.89
RTF1-201ENST00000389629 LINC00476Q8WZB0 136 aa9.49□□□□□ -0.89
RTF1-201ENST00000389629 SPAG11AQ6PDA7 123 aa9.48□□□□□ -0.89
RTF1-201ENST00000389629 FP248Q71RG6 208 aaPredicted RBP9.47□□□□□ -0.89
RTF1-201ENST00000389629 LINC00612Q8N6U2 182 aa9.47□□□□□ -0.89
RTF1-201ENST00000389629 A0A0G2JQZ4 141 aa9.46□□□□□ -0.89
RTF1-201ENST00000389629 A0A1W2PNN7 141 aa9.46□□□□□ -0.89
RTF1-201ENST00000389629 ASH1LQ9NR48 2969 aaKnown RBP9.46□□□□□ -0.89
RTF1-201ENST00000389629 ITPR1Q14643 2758 aa9.46□□□□□ -0.9
RTF1-201ENST00000389629 TRAV22A0A0B4J277 110 aa9.46□□□□□ -0.9
RTF1-201ENST00000389629 C14orf177Q52M58 125 aa9.46□□□□□ -0.9
RTF1-201ENST00000389629 CR1P17927 2039 aa9.45□□□□□ -0.9
RTF1-201ENST00000389629 TEX15Q9BXT5 2789 aa9.45□□□□□ -0.9
RTF1-201ENST00000389629 SERTAD4-AS1Q5TG53 156 aa9.45□□□□□ -0.9
RTF1-201ENST00000389629 FLNCQ14315 2725 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 ATRQ13535 2644 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 HECTD1Q9ULT8 2610 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 FAM168BA1KXE4 195 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 F8WDY8 70 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 Q8N377 158 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 PRR34Q9NV39 138 aa9.44□□□□□ -0.9
RTF1-201ENST00000389629 CFAP46Q8IYW2 2715 aa9.43□□□□□ -0.9
RTF1-201ENST00000389629 LINC01556Q5JQF7 62 aa9.43□□□□□ -0.9
RTF1-201ENST00000389629 MUC3AQ02505 3323 aa9.43□□□□□ -0.9
RTF1-201ENST00000389629 FAM229BQ4G0N7 80 aa9.42□□□□□ -0.9
RTF1-201ENST00000389629 UNC79Q9P2D8 2635 aa9.42□□□□□ -0.9
RTF1-201ENST00000389629 A0A1B0GW54 56 aa9.42□□□□□ -0.9
RTF1-201ENST00000389629 Q8NDZ9 215 aa9.42□□□□□ -0.9
RTF1-201ENST00000389629 HRNRQ86YZ3 2850 aaPredicted RBP9.41□□□□□ -0.9
RTF1-201ENST00000389629 LAMA5O15230 3695 aa9.4□□□□□ -0.91
RTF1-201ENST00000389629 OCR1Q9BZK8 76 aa9.4□□□□□ -0.91
RTF1-201ENST00000389629 RETNLBQ9BQ08 111 aa9.38□□□□□ -0.91
RTF1-201ENST00000389629 SMG1Q96Q15 3661 aaKnown RBP9.37□□□□□ -0.91
RTF1-201ENST00000389629 KRTAP10-3P60369 221 aa9.37□□□□□ -0.91
RTF1-201ENST00000389629 KCNQ1DNQ9H478 68 aa9.37□□□□□ -0.91
RTF1-201ENST00000389629 A0A1W2PNM2 257 aa9.37□□□□□ -0.91
RTF1-201ENST00000389629 C15orf56Q8N910 161 aa9.36□□□□□ -0.91
RTF1-201ENST00000389629 EPM2AB3EWF7 344 aa9.36□□□□□ -0.91
RTF1-201ENST00000389629 H3BNG1 76 aa9.34□□□□□ -0.91
RTF1-201ENST00000389629 KRTAP1-3Q8IUG1 177 aa9.34□□□□□ -0.91
RTF1-201ENST00000389629 MGAM2Q2M2H8 2515 aa9.34□□□□□ -0.91
RTF1-201ENST00000389629 RELNP78509 3460 aa9.33□□□□□ -0.92
RTF1-201ENST00000389629 ZANQ9Y493 2812 aa9.33□□□□□ -0.92
RTF1-201ENST00000389629 IGSF10Q6WRI0 2623 aa9.33□□□□□ -0.92
RTF1-201ENST00000389629 COA5Q86WW8 74 aa9.32□□□□□ -0.92
RTF1-201ENST00000389629 CSMD1Q96PZ7 3565 aa9.32□□□□□ -0.92
RTF1-201ENST00000389629 IGLV1-50A0A075B6I6 118 aa9.31□□□□□ -0.92
RTF1-201ENST00000389629 IGFL1Q6UW32 110 aa9.31□□□□□ -0.92
RTF1-201ENST00000389629 FLNBO75369 2602 aaKnown RBP9.3□□□□□ -0.92
RTF1-201ENST00000389629 H3BPC8 53 aa9.3□□□□□ -0.92
RTF1-201ENST00000389629 C4orf48Q5BLP8 95 aa9.29□□□□□ -0.92
RTF1-201ENST00000389629 CIRBP-AS1Q8TBR5 109 aa9.29□□□□□ -0.92
RTF1-201ENST00000389629 ZNF706Q9Y5V0 76 aaPredicted RBP9.28□□□□□ -0.92
RTF1-201ENST00000389629 CD164Q04900 197 aa9.28□□□□□ -0.92
RTF1-201ENST00000389629 PHF5AQ7RTV0 110 aaKnown RBP9.28□□□□□ -0.92
RTF1-201ENST00000389629 PRR15Q8IV56 129 aa9.27□□□□□ -0.93
RTF1-201ENST00000389629 LINC00588Q9Y4M8 146 aa9.26□□□□□ -0.93
RTF1-201ENST00000389629 SPINK1P00995 79 aa9.25□□□□□ -0.93
RTF1-201ENST00000389629 DCHS2Q6V1P9 2916 aa9.25□□□□□ -0.93
RTF1-201ENST00000389629 SETXQ7Z333 2677 aaKnown RBP9.25□□□□□ -0.93
RTF1-201ENST00000389629 A8MWP4 228 aa9.25□□□□□ -0.93
RTF1-201ENST00000389629 CHTF8P0CG12 524 aa9.25□□□□□ -0.93
RTF1-201ENST00000389629 CYP4F30PQ9H0H9 118 aa9.24□□□□□ -0.93
RTF1-201ENST00000389629 TP53AIP1Q9HCN2 124 aa9.24□□□□□ -0.93
RTF1-201ENST00000389629 IGLV5-48A0A075B6I7 105 aa9.24□□□□□ -0.93
RTF1-201ENST00000389629 KRTAP1-1Q07627 177 aa9.24□□□□□ -0.93
RTF1-201ENST00000389629 Q1T7F1 81 aa9.24□□□□□ -0.93
RTF1-201ENST00000389629 LOC101927531A0A1B0GV80 90 aa9.23□□□□□ -0.93
RTF1-201ENST00000389629 DSCR10P59022 87 aa9.23□□□□□ -0.93
RTF1-201ENST00000389629 DNAH10OSP0CZ25 163 aa9.22□□□□□ -0.93
RTF1-201ENST00000389629 KTN1-AS1Q86SY8 53 aa9.21□□□□□ -0.93
RTF1-201ENST00000389629 A0A1B0GU69 56 aa9.21□□□□□ -0.93
RTF1-201ENST00000389629 ATP11AUNQ6ZP68 121 aa9.21□□□□□ -0.94
RTF1-201ENST00000389629 UTP20O75691 2785 aaKnown RBP9.21□□□□□ -0.94
RTF1-201ENST00000389629 MOBPQ13875 183 aa9.2□□□□□ -0.94
RTF1-201ENST00000389629 NOTCH1P46531 2555 aa9.19□□□□□ -0.94
RTF1-201ENST00000389629 CASC10Q5T4H9 136 aa9.18□□□□□ -0.94
RTF1-201ENST00000389629 MAST4O15021 2626 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms