RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 NKAPP1Q8N9T2 125 aa14.04□□□□□ -0.16
TRIM54-202ENST00000380075 PDE6GP18545 87 aa14.03□□□□□ -0.16
TRIM54-202ENST00000380075 APLNQ9ULZ1 77 aa14.03□□□□□ -0.16
TRIM54-202ENST00000380075 FAM236AA0A1B0GUQ0 79 aa14.02□□□□□ -0.16
TRIM54-202ENST00000380075 FAM236BA0A1B0GV22 79 aa14.02□□□□□ -0.16
TRIM54-202ENST00000380075 LINC00528Q8N1L1 170 aa14.02□□□□□ -0.16
TRIM54-202ENST00000380075 KCNQ1DNQ9H478 68 aa14.02□□□□□ -0.17
TRIM54-202ENST00000380075 Q6ZQT0 140 aa14.01□□□□□ -0.17
TRIM54-202ENST00000380075 IGLV5-37A0A075B6J1 123 aa14□□□□□ -0.17
TRIM54-202ENST00000380075 ATP5EP2Q5VTU8 51 aa14□□□□□ -0.17
TRIM54-202ENST00000380075 DSCR8Q96T75 97 aa13.99□□□□□ -0.17
TRIM54-202ENST00000380075 SERTAD4-AS1Q5TG53 156 aa13.96□□□□□ -0.17
TRIM54-202ENST00000380075 C7orf33Q8WU49 177 aa13.96□□□□□ -0.17
TRIM54-202ENST00000380075 UBL5Q9BZL1 73 aa13.96□□□□□ -0.18
TRIM54-202ENST00000380075 IGKV3D-7A0A0C4DH55 119 aa13.93□□□□□ -0.18
TRIM54-202ENST00000380075 HIST1H4AP62805 103 aaKnown RBP13.93□□□□□ -0.18
TRIM54-202ENST00000380075 LOC107984640A0A0U1RRK4 108 aa13.92□□□□□ -0.18
TRIM54-202ENST00000380075 KMT2CQ8NEZ4 4911 aaKnown RBP13.92□□□□□ -0.18
TRIM54-202ENST00000380075 PRYO14603 147 aa13.92□□□□□ -0.18
TRIM54-202ENST00000380075 TRBV7-4A0A0J9YYF1 115 aa13.91□□□□□ -0.18
TRIM54-202ENST00000380075 DNAH1Q9P2D7 4330 aa13.9□□□□□ -0.18
TRIM54-202ENST00000380075 ALMS1Q8TCU4 4167 aa13.9□□□□□ -0.18
TRIM54-202ENST00000380075 VPS13DQ5THJ4 4388 aa13.89□□□□□ -0.19
TRIM54-202ENST00000380075 CCDC179H3BU77 68 aa13.89□□□□□ -0.19
TRIM54-202ENST00000380075 ATOX1O00244 68 aa13.88□□□□□ -0.19
TRIM54-202ENST00000380075 LINC00476Q8WZB0 136 aa13.88□□□□□ -0.19
TRIM54-202ENST00000380075 SACSQ9NZJ4 4579 aa13.88□□□□□ -0.19
TRIM54-202ENST00000380075 IGLV1-50A0A075B6I6 118 aa13.87□□□□□ -0.19
TRIM54-202ENST00000380075 LY6G6CO95867 125 aa13.87□□□□□ -0.19
TRIM54-202ENST00000380075 DHRS4-AS1Q9P1J3 65 aa13.87□□□□□ -0.19
TRIM54-202ENST00000380075 SPRR1AP35321 89 aa13.86□□□□□ -0.19
TRIM54-202ENST00000380075 UBE2DNLQ8IWF7 75 aa13.86□□□□□ -0.19
TRIM54-202ENST00000380075 KMT2AQ03164 3969 aa13.85□□□□□ -0.19
TRIM54-202ENST00000380075 Q6ZRX8 168 aa13.84□□□□□ -0.19
TRIM54-202ENST00000380075 KRTAP4-16G5E9R7 235 aaPredicted RBP13.83□□□□□ -0.19
TRIM54-202ENST00000380075 LCE6AA0A183 80 aa13.83□□□□□ -0.2
TRIM54-202ENST00000380075 FAM168BA1KXE4 195 aa13.83□□□□□ -0.2
TRIM54-202ENST00000380075 CNBPP62633 177 aaKnown RBP13.83□□□□□ -0.2
TRIM54-202ENST00000380075 MRPL55Q7Z7F7 128 aaKnown RBP13.83□□□□□ -0.2
TRIM54-202ENST00000380075 KRTAP1-5Q9BYS1 174 aa13.83□□□□□ -0.2
TRIM54-202ENST00000380075 HYDINQ4G0P3 5121 aa13.82□□□□□ -0.2
TRIM54-202ENST00000380075 B5MCH6 92 aa13.82□□□□□ -0.2
TRIM54-202ENST00000380075 ETDCA0A1B0GVM5 59 aa13.82□□□□□ -0.2
TRIM54-202ENST00000380075 C14orf177Q52M58 125 aa13.81□□□□□ -0.2
TRIM54-202ENST00000380075 KRTAP7-1Q8IUC3 87 aa13.81□□□□□ -0.2
TRIM54-202ENST00000380075 PSCAO43653 123 aa13.8□□□□□ -0.2
TRIM54-202ENST00000380075 RPL37AP8A6NKH3 93 aa13.8□□□□□ -0.2
TRIM54-202ENST00000380075 M0R2N4 97 aa13.8□□□□□ -0.2
TRIM54-202ENST00000380075 UQCRQO14949 82 aa13.8□□□□□ -0.2
TRIM54-202ENST00000380075 Q6ZVQ6 151 aa13.78□□□□□ -0.2
TRIM54-202ENST00000380075 FAM19A5Q7Z5A7 132 aaPredicted RBP13.78□□□□□ -0.2
TRIM54-202ENST00000380075 C3orf22Q8N5N4 141 aa13.78□□□□□ -0.2
TRIM54-202ENST00000380075 A0A087WVE0 104 aa13.77□□□□□ -0.21
TRIM54-202ENST00000380075 C16orf90A8MZG2 172 aa13.77□□□□□ -0.21
TRIM54-202ENST00000380075 COX7CP15954 63 aa13.75□□□□□ -0.21
TRIM54-202ENST00000380075 CXCL6P80162 114 aa13.75□□□□□ -0.21
TRIM54-202ENST00000380075 Q8N377 158 aa13.75□□□□□ -0.21
TRIM54-202ENST00000380075 RYR2Q92736 4967 aa13.75□□□□□ -0.21
TRIM54-202ENST00000380075 LINC01547P58512 204 aaPredicted RBP13.74□□□□□ -0.21
TRIM54-202ENST00000380075 Q9BRP9 147 aa13.74□□□□□ -0.21
TRIM54-202ENST00000380075 IGLV5-48A0A075B6I7 105 aa13.72□□□□□ -0.21
TRIM54-202ENST00000380075 DNAH6Q9C0G6 4158 aa13.72□□□□□ -0.21
TRIM54-202ENST00000380075 REG3GQ6UW15 175 aa13.71□□□□□ -0.21
TRIM54-202ENST00000380075 PKIGQ9Y2B9 76 aa13.71□□□□□ -0.21
TRIM54-202ENST00000380075 RYR3Q15413 4870 aa13.71□□□□□ -0.21
TRIM54-202ENST00000380075 DEFB105AQ8NG35 78 aa13.71□□□□□ -0.22
TRIM54-202ENST00000380075 A0A096LNI7 61 aa13.7□□□□□ -0.22
TRIM54-202ENST00000380075 HAMPP81172 84 aa13.7□□□□□ -0.22
TRIM54-202ENST00000380075 FAM19A1Q7Z5A9 133 aa13.7□□□□□ -0.22
TRIM54-202ENST00000380075 C9orf153Q5TBE3 101 aa13.69□□□□□ -0.22
TRIM54-202ENST00000380075 SERP2Q8N6R1 65 aa13.69□□□□□ -0.22
TRIM54-202ENST00000380075 A0A1B0GW54 56 aa13.68□□□□□ -0.22
TRIM54-202ENST00000380075 NBDYA0A0U1RRE5 68 aa13.66□□□□□ -0.22
TRIM54-202ENST00000380075 BCE1O60756 84 aa13.66□□□□□ -0.22
TRIM54-202ENST00000380075 UBE2BP63146 152 aa13.65□□□□□ -0.22
TRIM54-202ENST00000380075 SS18L2Q9UHA2 77 aa13.65□□□□□ -0.22
TRIM54-202ENST00000380075 CRYGAP11844 174 aa13.64□□□□□ -0.23
TRIM54-202ENST00000380075 IGKV2-24A0A0C4DH68 120 aa13.63□□□□□ -0.23
TRIM54-202ENST00000380075 TNP2Q05952 138 aa13.63□□□□□ -0.23
TRIM54-202ENST00000380075 DNAH2Q9P225 4427 aa13.63□□□□□ -0.23
TRIM54-202ENST00000380075 Q6ZR54 194 aa13.62□□□□□ -0.23
TRIM54-202ENST00000380075 SVIPQ8NHG7 77 aa13.62□□□□□ -0.23
TRIM54-202ENST00000380075 A0A1W2PNN7 141 aa13.62□□□□□ -0.23
TRIM54-202ENST00000380075 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.61□□□□□ -0.23
TRIM54-202ENST00000380075 LRCOL1A6NCL2 159 aa13.6□□□□□ -0.23
TRIM54-202ENST00000380075 C9orf163Q8N9P6 203 aa13.6□□□□□ -0.23
TRIM54-202ENST00000380075 ST20-AS1Q8NBB2 130 aa13.6□□□□□ -0.23
TRIM54-202ENST00000380075 ERC2-IT1O76042 136 aa13.6□□□□□ -0.23
TRIM54-202ENST00000380075 FUSP35637 526 aaKnown RBP eCLIP13.6□□□□□ -0.23
TRIM54-202ENST00000380075 NREPQ16612 68 aa13.58□□□□□ -0.24
TRIM54-202ENST00000380075 C1orf137Q5JT78 98 aa13.57□□□□□ -0.24
TRIM54-202ENST00000380075 LINC00474Q9P2X8 69 aa13.57□□□□□ -0.24
TRIM54-202ENST00000380075 Q6ZRN7 208 aaPredicted RBP13.56□□□□□ -0.24
TRIM54-202ENST00000380075 SMIM20Q8N5G0 67 aa13.56□□□□□ -0.24
TRIM54-202ENST00000380075 DNAH10Q8IVF4 4471 aa13.54□□□□□ -0.24
TRIM54-202ENST00000380075 FRAS1Q86XX4 4008 aa13.54□□□□□ -0.24
TRIM54-202ENST00000380075 Q8NBF4 154 aa13.53□□□□□ -0.24
TRIM54-202ENST00000380075 A0A1W2PNM2 257 aa13.52□□□□□ -0.25
TRIM54-202ENST00000380075 F8WEM9 126 aa13.51□□□□□ -0.25
TRIM54-202ENST00000380075 H0Y9J4 135 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms