RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ZNF462Q96JM2 2506 aa10.48□□□□□ -0.73
COL17A1-202ENST00000369733 SPACA4Q8TDM5 124 aa10.47□□□□□ -0.73
COL17A1-202ENST00000369733 A0A0C4DFX4 3053 aa10.47□□□□□ -0.73
COL17A1-202ENST00000369733 LINC00313P59037 77 aa10.46□□□□□ -0.73
COL17A1-202ENST00000369733 MRPL34Q9BQ48 92 aaKnown RBP10.46□□□□□ -0.73
COL17A1-202ENST00000369733 A0A0G2JQZ4 141 aa10.45□□□□□ -0.74
COL17A1-202ENST00000369733 A0A1W2PNN7 141 aa10.45□□□□□ -0.74
COL17A1-202ENST00000369733 A0A096LNT2 108 aa10.44□□□□□ -0.74
COL17A1-202ENST00000369733 IGLV8-61A0A075B6I0 122 aa10.43□□□□□ -0.74
COL17A1-202ENST00000369733 CHD7Q9P2D1 2997 aa10.43□□□□□ -0.74
COL17A1-202ENST00000369733 H3BS24 57 aa10.42□□□□□ -0.74
COL17A1-202ENST00000369733 A0A1W2PNM2 257 aa10.42□□□□□ -0.74
COL17A1-202ENST00000369733 C8orf17Q9NRJ1 99 aa10.39□□□□□ -0.75
COL17A1-202ENST00000369733 PLA2G2DQ9UNK4 145 aa10.39□□□□□ -0.75
COL17A1-202ENST00000369733 ACANP16112 2415 aa10.38□□□□□ -0.75
COL17A1-202ENST00000369733 NBDYA0A0U1RRE5 68 aa10.38□□□□□ -0.75
COL17A1-202ENST00000369733 RTL8CO15255 209 aa10.37□□□□□ -0.75
COL17A1-202ENST00000369733 TLX1NBP0CAT3 122 aa10.37□□□□□ -0.75
COL17A1-202ENST00000369733 OCR1Q9BZK8 76 aa10.37□□□□□ -0.75
COL17A1-202ENST00000369733 KTN1-AS1Q86SY8 53 aa10.37□□□□□ -0.75
COL17A1-202ENST00000369733 FAM229AH3BQW9 127 aa10.36□□□□□ -0.75
COL17A1-202ENST00000369733 CYSTM1Q9H1C7 97 aa10.36□□□□□ -0.75
COL17A1-202ENST00000369733 Q5XG85 94 aa10.34□□□□□ -0.75
COL17A1-202ENST00000369733 IGLV5-48A0A075B6I7 105 aa10.34□□□□□ -0.75
COL17A1-202ENST00000369733 UQCR11O14957 56 aa10.33□□□□□ -0.76
COL17A1-202ENST00000369733 SPANXA2-OT1Q8N9U9 137 aa10.33□□□□□ -0.76
COL17A1-202ENST00000369733 A0A1B0GVX0 72 aa10.32□□□□□ -0.76
COL17A1-202ENST00000369733 KRTAP24-1Q3LI83 254 aa10.31□□□□□ -0.76
COL17A1-202ENST00000369733 KRTAP10-3P60369 221 aa10.3□□□□□ -0.76
COL17A1-202ENST00000369733 Q1T7F1 81 aa10.3□□□□□ -0.76
COL17A1-202ENST00000369733 MIR22HGQ0VDD5 57 aa10.27□□□□□ -0.76
COL17A1-202ENST00000369733 Q96NJ1 140 aa10.27□□□□□ -0.76
COL17A1-202ENST00000369733 LCA10Q71F78 164 aa10.27□□□□□ -0.77
COL17A1-202ENST00000369733 DSCR10P59022 87 aa10.27□□□□□ -0.77
COL17A1-202ENST00000369733 KRTAP10-11P60412 298 aa10.27□□□□□ -0.77
COL17A1-202ENST00000369733 CASC10Q5T4H9 136 aa10.24□□□□□ -0.77
COL17A1-202ENST00000369733 TYMSOSQ8TAI1 123 aa10.24□□□□□ -0.77
COL17A1-202ENST00000369733 CDC42SE1Q9NRR8 79 aa10.24□□□□□ -0.77
COL17A1-202ENST00000369733 CHD9Q3L8U1 2897 aa10.22□□□□□ -0.77
COL17A1-202ENST00000369733 FAM229BQ4G0N7 80 aa10.22□□□□□ -0.77
COL17A1-202ENST00000369733 HTTP42858 3142 aa10.22□□□□□ -0.77
COL17A1-202ENST00000369733 FP248Q71RG6 208 aaPredicted RBP10.22□□□□□ -0.77
COL17A1-202ENST00000369733 IGLV5-37A0A075B6J1 123 aa10.2□□□□□ -0.78
COL17A1-202ENST00000369733 SPRR4Q96PI1 79 aa10.19□□□□□ -0.78
COL17A1-202ENST00000369733 Q8NDZ9 215 aa10.18□□□□□ -0.78
COL17A1-202ENST00000369733 ZNF861PO60384 105 aa10.17□□□□□ -0.78
COL17A1-202ENST00000369733 SPINT4Q6UDR6 99 aa10.17□□□□□ -0.78
COL17A1-202ENST00000369733 RBM12B-AS1Q9P1G2 102 aa10.17□□□□□ -0.78
COL17A1-202ENST00000369733 F8P00451 2351 aa10.17□□□□□ -0.78
COL17A1-202ENST00000369733 C9orf163Q8N9P6 203 aa10.16□□□□□ -0.78
COL17A1-202ENST00000369733 SSBP3-AS1Q7Z2R9 100 aa10.15□□□□□ -0.78
COL17A1-202ENST00000369733 ANAPC11Q9NYG5 84 aa10.15□□□□□ -0.78
COL17A1-202ENST00000369733 CFAP54Q96N23 3096 aa10.14□□□□□ -0.79
COL17A1-202ENST00000369733 OXTP01178 125 aa10.13□□□□□ -0.79
COL17A1-202ENST00000369733 CNBPP62633 177 aaKnown RBP10.12□□□□□ -0.79
COL17A1-202ENST00000369733 KRTAP1-3Q8IUG1 177 aa10.11□□□□□ -0.79
COL17A1-202ENST00000369733 K7EIL1 84 aa10.1□□□□□ -0.79
COL17A1-202ENST00000369733 PLA2G1BP04054 148 aaKnown RBP10.09□□□□□ -0.79
COL17A1-202ENST00000369733 IGLV7-46A0A075B6I9 117 aa10.08□□□□□ -0.8
COL17A1-202ENST00000369733 MKI67P46013 3256 aaKnown RBP10.08□□□□□ -0.8
COL17A1-202ENST00000369733 CR1P17927 2039 aa10.08□□□□□ -0.8
COL17A1-202ENST00000369733 EPG5Q9HCE0 2579 aa10.08□□□□□ -0.8
COL17A1-202ENST00000369733 PRR26Q8N8Z3 221 aa10.07□□□□□ -0.8
COL17A1-202ENST00000369733 Q75L30 129 aa10.07□□□□□ -0.8
COL17A1-202ENST00000369733 PSORS1C2Q9UIG4 136 aa10.06□□□□□ -0.8
COL17A1-202ENST00000369733 A0A087WTM6 91 aa10.04□□□□□ -0.8
COL17A1-202ENST00000369733 LAMA2P24043 3122 aaKnown RBP10.04□□□□□ -0.8
COL17A1-202ENST00000369733 Q8N9P0 234 aaPredicted RBP10.04□□□□□ -0.8
COL17A1-202ENST00000369733 KRTAP1-1Q07627 177 aa10.03□□□□□ -0.8
COL17A1-202ENST00000369733 FASNP49327 2511 aaKnown RBP10.03□□□□□ -0.8
COL17A1-202ENST00000369733 IGLV7-43P04211 117 aa10.01□□□□□ -0.81
COL17A1-202ENST00000369733 TRANK1O15050 2925 aa10□□□□□ -0.81
COL17A1-202ENST00000369733 RANBP2P49792 3224 aaKnown RBP9.99□□□□□ -0.81
COL17A1-202ENST00000369733 Q5VV11 94 aa9.97□□□□□ -0.81
COL17A1-202ENST00000369733 LINC01558Q9Y6Z2 57 aa9.96□□□□□ -0.81
COL17A1-202ENST00000369733 SPRR1AP35321 89 aa9.96□□□□□ -0.81
COL17A1-202ENST00000369733 MMP24-AS1A0A0U1RRL7 71 aa9.96□□□□□ -0.82
COL17A1-202ENST00000369733 LINC00304Q8N9R0 145 aa9.95□□□□□ -0.82
COL17A1-202ENST00000369733 APLNQ9ULZ1 77 aa9.95□□□□□ -0.82
COL17A1-202ENST00000369733 Q8N1X5 172 aa9.95□□□□□ -0.82
COL17A1-202ENST00000369733 C9orf92A6NGG3 77 aa9.94□□□□□ -0.82
COL17A1-202ENST00000369733 CRIPTQ9P021 101 aa9.93□□□□□ -0.82
COL17A1-202ENST00000369733 LAMA3Q16787 3333 aa9.91□□□□□ -0.82
COL17A1-202ENST00000369733 HRES1P13985 223 aa9.9□□□□□ -0.82
COL17A1-202ENST00000369733 FLNAP21333 2647 aaKnown RBP9.89□□□□□ -0.83
COL17A1-202ENST00000369733 LINC01554Q52M75 96 aa9.89□□□□□ -0.83
COL17A1-202ENST00000369733 BRCA2P51587 3418 aa9.88□□□□□ -0.83
COL17A1-202ENST00000369733 USP24Q9UPU5 2620 aa9.88□□□□□ -0.83
COL17A1-202ENST00000369733 LINC00472Q9H8W2 130 aa9.85□□□□□ -0.83
COL17A1-202ENST00000369733 PRAC1Q96KF2 57 aa9.83□□□□□ -0.84
COL17A1-202ENST00000369733 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.83□□□□□ -0.84
COL17A1-202ENST00000369733 MGAQ8IWI9 3026 aa9.82□□□□□ -0.84
COL17A1-202ENST00000369733 TRIOO75962 3097 aa9.82□□□□□ -0.84
COL17A1-202ENST00000369733 UNC80Q8N2C7 3258 aa9.82□□□□□ -0.84
COL17A1-202ENST00000369733 SPINK7P58062 85 aa9.82□□□□□ -0.84
COL17A1-202ENST00000369733 WWC2-AS2Q96NR7 200 aa9.81□□□□□ -0.84
COL17A1-202ENST00000369733 A0A0D9SG42 100 aa9.8□□□□□ -0.84
COL17A1-202ENST00000369733 KRTAP26-1Q6PEX3 210 aa9.79□□□□□ -0.84
COL17A1-202ENST00000369733 ITPR3Q14573 2671 aa9.79□□□□□ -0.84
COL17A1-202ENST00000369733 SPRR1BP22528 89 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms