RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 M0R378 163 aa10.57□□□□□ -0.72
HMGA1-202ENST00000347617 COL6A5A8TX70 2615 aa10.57□□□□□ -0.72
HMGA1-202ENST00000347617 DEFB4AO15263 64 aa10.57□□□□□ -0.72
HMGA1-202ENST00000347617 IGKV4-1P06312 121 aa10.56□□□□□ -0.72
HMGA1-202ENST00000347617 KPRPQ5T749 579 aaPredicted RBP10.56□□□□□ -0.72
HMGA1-202ENST00000347617 OCR1Q9BZK8 76 aa10.56□□□□□ -0.72
HMGA1-202ENST00000347617 SCXQ7RTU7 201 aa10.55□□□□□ -0.72
HMGA1-202ENST00000347617 C6orf48Q9UBA6 75 aa10.55□□□□□ -0.72
HMGA1-202ENST00000347617 C1orf43Q9BWL3 253 aa10.54□□□□□ -0.72
HMGA1-202ENST00000347617 NBEAL2Q6ZNJ1 2754 aa10.54□□□□□ -0.72
HMGA1-202ENST00000347617 H3BNG1 76 aa10.54□□□□□ -0.72
HMGA1-202ENST00000347617 FUSP35637 526 aaKnown RBP eCLIP10.54□□□□□ -0.72
HMGA1-202ENST00000347617 LINC00528Q8N1L1 170 aa10.54□□□□□ -0.72
HMGA1-202ENST00000347617 VPREB1P12018 145 aa10.53□□□□□ -0.72
HMGA1-202ENST00000347617 F8WDY8 70 aa10.52□□□□□ -0.73
HMGA1-202ENST00000347617 ESRGQ1W209 222 aa10.52□□□□□ -0.73
HMGA1-202ENST00000347617 HIGD2BQ4VC39 106 aa10.52□□□□□ -0.73
HMGA1-202ENST00000347617 CMYA5Q8N3K9 4069 aa10.51□□□□□ -0.73
HMGA1-202ENST00000347617 KRTAP21-3Q3LHN1 58 aa10.51□□□□□ -0.73
HMGA1-202ENST00000347617 LINC00474Q9P2X8 69 aa10.5□□□□□ -0.73
HMGA1-202ENST00000347617 PKD1L1Q8TDX9 2849 aa10.5□□□□□ -0.73
HMGA1-202ENST00000347617 DNAH3Q8TD57 4116 aa10.49□□□□□ -0.73
HMGA1-202ENST00000347617 XAGE1AQ9HD64 81 aa10.48□□□□□ -0.73
HMGA1-202ENST00000347617 KLK12Q9UKR0 248 aa10.48□□□□□ -0.73
HMGA1-202ENST00000347617 RETNQ9HD89 108 aa10.47□□□□□ -0.73
HMGA1-202ENST00000347617 Q6ZTC4 211 aa10.47□□□□□ -0.73
HMGA1-202ENST00000347617 CAMK2N2Q96S95 79 aa10.47□□□□□ -0.73
HMGA1-202ENST00000347617 MDFIQ99750 246 aa10.47□□□□□ -0.73
HMGA1-202ENST00000347617 LCE6AA0A183 80 aa10.46□□□□□ -0.74
HMGA1-202ENST00000347617 K7EIL1 84 aa10.46□□□□□ -0.74
HMGA1-202ENST00000347617 BRK1Q8WUW1 75 aa10.45□□□□□ -0.74
HMGA1-202ENST00000347617 ANK2Q01484 3957 aa10.45□□□□□ -0.74
HMGA1-202ENST00000347617 IGLV5-48A0A075B6I7 105 aa10.44□□□□□ -0.74
HMGA1-202ENST00000347617 HTN3P15516 51 aa10.44□□□□□ -0.74
HMGA1-202ENST00000347617 C11orf45Q8TAV5 145 aa10.43□□□□□ -0.74
HMGA1-202ENST00000347617 C1orf195Q5TG92 126 aa10.41□□□□□ -0.74
HMGA1-202ENST00000347617 Q8N9L7 120 aa10.4□□□□□ -0.74
HMGA1-202ENST00000347617 KCNQ1DNQ9H478 68 aa10.4□□□□□ -0.74
HMGA1-202ENST00000347617 DHRS4-AS1Q9P1J3 65 aa10.4□□□□□ -0.74
HMGA1-202ENST00000347617 FAM229BQ4G0N7 80 aa10.39□□□□□ -0.75
HMGA1-202ENST00000347617 PKIGQ9Y2B9 76 aa10.39□□□□□ -0.75
HMGA1-202ENST00000347617 HIGD2AQ9BW72 106 aa10.39□□□□□ -0.75
HMGA1-202ENST00000347617 hDV103S1A0JD37 113 aa10.38□□□□□ -0.75
HMGA1-202ENST00000347617 DEFB131BA0A096LNP1 70 aa10.37□□□□□ -0.75
HMGA1-202ENST00000347617 MPLKIPQ8TAP9 179 aa10.37□□□□□ -0.75
HMGA1-202ENST00000347617 Q1T7F1 81 aa10.37□□□□□ -0.75
HMGA1-202ENST00000347617 Q6ZRU5 148 aa10.37□□□□□ -0.75
HMGA1-202ENST00000347617 PRB2P02812 416 aaPredicted RBP10.36□□□□□ -0.75
HMGA1-202ENST00000347617 KRTAP26-1Q6PEX3 210 aa10.36□□□□□ -0.75
HMGA1-202ENST00000347617 NOTCH1P46531 2555 aa10.36□□□□□ -0.75
HMGA1-202ENST00000347617 C3orf84H3BNL1 204 aa10.35□□□□□ -0.75
HMGA1-202ENST00000347617 Q8N377 158 aa10.35□□□□□ -0.75
HMGA1-202ENST00000347617 NKAPP1Q8N9T2 125 aa10.35□□□□□ -0.75
HMGA1-202ENST00000347617 SMIM29Q86T20 159 aa10.34□□□□□ -0.75
HMGA1-202ENST00000347617 PLA2G2DQ9UNK4 145 aa10.34□□□□□ -0.75
HMGA1-202ENST00000347617 V9GYY9 64 aa10.34□□□□□ -0.75
HMGA1-202ENST00000347617 NBEAL1Q6ZS30 2694 aa10.34□□□□□ -0.75
HMGA1-202ENST00000347617 ETDCA0A1B0GVM5 59 aa10.34□□□□□ -0.75
HMGA1-202ENST00000347617 ZCCHC13Q8WW36 166 aaKnown RBP10.34□□□□□ -0.75
HMGA1-202ENST00000347617 C15orf56Q8N910 161 aa10.33□□□□□ -0.76
HMGA1-202ENST00000347617 Q8NBF4 154 aa10.33□□□□□ -0.76
HMGA1-202ENST00000347617 PRR15Q8IV56 129 aa10.32□□□□□ -0.76
HMGA1-202ENST00000347617 CYP4F30PQ9H0H9 118 aa10.32□□□□□ -0.76
HMGA1-202ENST00000347617 SPRR4Q96PI1 79 aa10.31□□□□□ -0.76
HMGA1-202ENST00000347617 DNHD1Q96M86 4753 aa10.31□□□□□ -0.76
HMGA1-202ENST00000347617 MGAM2Q2M2H8 2515 aa10.31□□□□□ -0.76
HMGA1-202ENST00000347617 TNP2Q05952 138 aa10.31□□□□□ -0.76
HMGA1-202ENST00000347617 FAM30AQ9NZY2 134 aa10.31□□□□□ -0.76
HMGA1-202ENST00000347617 NDUFB1O75438 58 aa10.3□□□□□ -0.76
HMGA1-202ENST00000347617 B9D2Q9BPU9 175 aa10.3□□□□□ -0.76
HMGA1-202ENST00000347617 SYCNQ0VAF6 134 aa10.29□□□□□ -0.76
HMGA1-202ENST00000347617 C1orf137Q5JT78 98 aa10.29□□□□□ -0.76
HMGA1-202ENST00000347617 A0A1W2PNM2 257 aa10.29□□□□□ -0.76
HMGA1-202ENST00000347617 Q6ZRP5 223 aa10.29□□□□□ -0.76
HMGA1-202ENST00000347617 Q6ZRX8 168 aa10.29□□□□□ -0.76
HMGA1-202ENST00000347617 IGLV5-37A0A075B6J1 123 aa10.28□□□□□ -0.76
HMGA1-202ENST00000347617 TLX1NBP0CAT3 122 aa10.28□□□□□ -0.76
HMGA1-202ENST00000347617 C7orf33Q8WU49 177 aa10.28□□□□□ -0.76
HMGA1-202ENST00000347617 TENM3Q9P273 2699 aa10.28□□□□□ -0.76
HMGA1-202ENST00000347617 DEFB105AQ8NG35 78 aa10.27□□□□□ -0.77
HMGA1-202ENST00000347617 LINC01556Q5JQF7 62 aa10.26□□□□□ -0.77
HMGA1-202ENST00000347617 C1orf64Q8NEQ6 169 aa10.26□□□□□ -0.77
HMGA1-202ENST00000347617 SPRR1AP35321 89 aa10.25□□□□□ -0.77
HMGA1-202ENST00000347617 WFDC10BQ8IUB3 73 aa10.25□□□□□ -0.77
HMGA1-202ENST00000347617 KRTAP4-16G5E9R7 235 aaPredicted RBP10.24□□□□□ -0.77
HMGA1-202ENST00000347617 DSCR10P59022 87 aa10.24□□□□□ -0.77
HMGA1-202ENST00000347617 HCG22E2RYF7 251 aa10.22□□□□□ -0.77
HMGA1-202ENST00000347617 DNAH10OSP0CZ25 163 aa10.22□□□□□ -0.77
HMGA1-202ENST00000347617 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.21□□□□□ -0.78
HMGA1-202ENST00000347617 IGLV1-50A0A075B6I6 118 aa10.2□□□□□ -0.78
HMGA1-202ENST00000347617 SERTAD4-AS1Q5TG53 156 aa10.2□□□□□ -0.78
HMGA1-202ENST00000347617 FBN3Q75N90 2809 aa10.2□□□□□ -0.78
HMGA1-202ENST00000347617 HUWE1Q7Z6Z7 4374 aaKnown RBP10.19□□□□□ -0.78
HMGA1-202ENST00000347617 H3BPC8 53 aa10.19□□□□□ -0.78
HMGA1-202ENST00000347617 MP68P56378 58 aa10.19□□□□□ -0.78
HMGA1-202ENST00000347617 SEC61GP60059 68 aa10.19□□□□□ -0.78
HMGA1-202ENST00000347617 Q9BRP9 147 aa10.19□□□□□ -0.78
HMGA1-202ENST00000347617 K7EQZ3 153 aa10.17□□□□□ -0.78
HMGA1-202ENST00000347617 IGKV2D-24A0A075B6R9 120 aa10.16□□□□□ -0.78
HMGA1-202ENST00000347617 LINC00588Q9Y4M8 146 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms