RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 C21orf62-AS1Q17RA5 79 aa12.47□□□□□ -0.41
HOXC4-201ENST00000303406 KRTAP7-1Q8IUC3 87 aa12.47□□□□□ -0.41
HOXC4-201ENST00000303406 LOC110117498A0A087WWA1 95 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 FAM168BA1KXE4 195 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 RBM3P98179 157 aaKnown RBP12.46□□□□□ -0.42
HOXC4-201ENST00000303406 SMCR5Q8TEV8 140 aa12.46□□□□□ -0.42
HOXC4-201ENST00000303406 PLECQ15149 4684 aaKnown RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 KRTAP4-16G5E9R7 235 aaPredicted RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 MRPL55Q7Z7F7 128 aaKnown RBP12.45□□□□□ -0.42
HOXC4-201ENST00000303406 IMUPQ9GZP8 106 aa12.45□□□□□ -0.42
HOXC4-201ENST00000303406 LRCOL1A6NCL2 159 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 PDE6GP18545 87 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 LAMTOR3Q9UHA4 124 aa12.44□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZRN7 208 aaPredicted RBP12.43□□□□□ -0.42
HOXC4-201ENST00000303406 DHRS4-AS1Q9P1J3 65 aa12.43□□□□□ -0.42
HOXC4-201ENST00000303406 DNAH7Q8WXX0 4024 aa12.43□□□□□ -0.42
HOXC4-201ENST00000303406 FAM19A5Q7Z5A7 132 aaPredicted RBP12.42□□□□□ -0.42
HOXC4-201ENST00000303406 A0A096LNI7 61 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 B5MCH6 92 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZRX8 168 aa12.41□□□□□ -0.42
HOXC4-201ENST00000303406 Q6ZQT0 140 aa12.4□□□□□ -0.42
HOXC4-201ENST00000303406 C9orf163Q8N9P6 203 aa12.39□□□□□ -0.43
HOXC4-201ENST00000303406 LINC00846Q9NV44 126 aa12.39□□□□□ -0.43
HOXC4-201ENST00000303406 VPS13DQ5THJ4 4388 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 ETDCA0A1B0GVM5 59 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 RPL37AP8A6NKH3 93 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 DSCR8Q96T75 97 aa12.38□□□□□ -0.43
HOXC4-201ENST00000303406 A0A1B0GV72 72 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 NDUFV3P56181 108 aaKnown RBP12.37□□□□□ -0.43
HOXC4-201ENST00000303406 Q6JHZ5 121 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 CSMD3Q7Z407 3707 aa12.37□□□□□ -0.43
HOXC4-201ENST00000303406 PRKDCP78527 4128 aaKnown RBP12.36□□□□□ -0.43
HOXC4-201ENST00000303406 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.35□□□□□ -0.43
HOXC4-201ENST00000303406 TRBV7-4A0A0J9YYF1 115 aa12.35□□□□□ -0.43
HOXC4-201ENST00000303406 DNAH10Q8IVF4 4471 aa12.34□□□□□ -0.43
HOXC4-201ENST00000303406 REG3GQ6UW15 175 aa12.34□□□□□ -0.43
HOXC4-201ENST00000303406 LYSTQ99698 3801 aa12.33□□□□□ -0.44
HOXC4-201ENST00000303406 IGKV2-24A0A0C4DH68 120 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 A0A1W2PNN7 141 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 Q9BRP9 147 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 LINC00474Q9P2X8 69 aa12.32□□□□□ -0.44
HOXC4-201ENST00000303406 STARD9Q9P2P6 4700 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 DNHD1Q96M86 4753 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 ATP5EP2Q5VTU8 51 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 Q6ZR54 194 aa12.31□□□□□ -0.44
HOXC4-201ENST00000303406 IGLV5-48A0A075B6I7 105 aa12.3□□□□□ -0.44
HOXC4-201ENST00000303406 LINC01547P58512 204 aaPredicted RBP12.3□□□□□ -0.44
HOXC4-201ENST00000303406 Q8N377 158 aa12.28□□□□□ -0.44
HOXC4-201ENST00000303406 UBL5Q9BZL1 73 aa12.28□□□□□ -0.44
HOXC4-201ENST00000303406 A0A087WTM6 91 aa12.26□□□□□ -0.45
HOXC4-201ENST00000303406 M0R2N4 97 aa12.25□□□□□ -0.45
HOXC4-201ENST00000303406 UBE2BP63146 152 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 ANAPC13Q9BS18 74 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 MEGF8Q7Z7M0 2845 aa12.24□□□□□ -0.45
HOXC4-201ENST00000303406 EPM2AB3EWF7 344 aa12.22□□□□□ -0.45
HOXC4-201ENST00000303406 CHTF8P0CG12 524 aa12.22□□□□□ -0.45
HOXC4-201ENST00000303406 H0Y9J4 135 aa12.21□□□□□ -0.45
HOXC4-201ENST00000303406 DEFB105AQ8NG35 78 aa12.21□□□□□ -0.46
HOXC4-201ENST00000303406 IGKV3D-7A0A0C4DH55 119 aa12.2□□□□□ -0.46
HOXC4-201ENST00000303406 TNP2Q05952 138 aa12.2□□□□□ -0.46
HOXC4-201ENST00000303406 A0A1B0GW54 56 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 ERC2-IT1O76042 136 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 PHF5AQ7RTV0 110 aaKnown RBP12.19□□□□□ -0.46
HOXC4-201ENST00000303406 FAM19A1Q7Z5A9 133 aa12.19□□□□□ -0.46
HOXC4-201ENST00000303406 FAM236AA0A1B0GUQ0 79 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 FAM236BA0A1B0GV22 79 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 ST20-AS1Q8NBB2 130 aa12.18□□□□□ -0.46
HOXC4-201ENST00000303406 SPACA4Q8TDM5 124 aa12.17□□□□□ -0.46
HOXC4-201ENST00000303406 HIST1H4AP62805 103 aaKnown RBP12.16□□□□□ -0.46
HOXC4-201ENST00000303406 Q6ZVQ6 151 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 WWC2-AS2Q96NR7 200 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 C1orf134Q5TEV5 83 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 DNAH6Q9C0G6 4158 aa12.16□□□□□ -0.46
HOXC4-201ENST00000303406 RTL8CO15255 209 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 CXCL6P80162 114 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 PRLHP81277 87 aa12.12□□□□□ -0.47
HOXC4-201ENST00000303406 PANO1I0J062 215 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 KRTAP11-1Q8IUC1 163 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 TENM2Q9NT68 2774 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 SMIM29Q86T20 159 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 LINC00476Q8WZB0 136 aa12.11□□□□□ -0.47
HOXC4-201ENST00000303406 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.1□□□□□ -0.47
HOXC4-201ENST00000303406 DNAH17Q9UFH2 4485 aa12.1□□□□□ -0.47
HOXC4-201ENST00000303406 J3QL48 77 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 BCE1O60756 84 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 LY6G6CO95867 125 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 SPRR1BP22528 89 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 C1orf137Q5JT78 98 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 C3orf22Q8N5N4 141 aa12.09□□□□□ -0.47
HOXC4-201ENST00000303406 ATOX1O00244 68 aa12.08□□□□□ -0.48
HOXC4-201ENST00000303406 FUSP35637 526 aaKnown RBP eCLIP12.08□□□□□ -0.48
HOXC4-201ENST00000303406 IGLV8-61A0A075B6I0 122 aa12.07□□□□□ -0.48
HOXC4-201ENST00000303406 HIGD2AQ9BW72 106 aa12.07□□□□□ -0.48
HOXC4-201ENST00000303406 F8WEM9 126 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 Q8NBF4 154 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 DNAH2Q9P225 4427 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 KRTAP13-1Q8IUC0 172 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 DPH3Q96FX2 82 aa12.06□□□□□ -0.48
HOXC4-201ENST00000303406 ALMS1Q8TCU4 4167 aa12.05□□□□□ -0.48
HOXC4-201ENST00000303406 UBE2AP49459 152 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 160.8 ms