RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 KRTAP24-1Q3LI83 254 aa6.91□□□□□ -1.3
CLIP1-201ENST00000302528 FAM104AQ969W3 186 aa6.91□□□□□ -1.3
CLIP1-201ENST00000302528 LRRK2Q5S007 2527 aa6.91□□□□□ -1.3
CLIP1-201ENST00000302528 NCOR2Q9Y618 2525 aa6.91□□□□□ -1.3
CLIP1-201ENST00000302528 KCNQ1DNQ9H478 68 aa6.9□□□□□ -1.3
CLIP1-201ENST00000302528 LINC00483Q53H64 154 aa6.9□□□□□ -1.3
CLIP1-201ENST00000302528 PCSK5Q92824 1860 aa6.9□□□□□ -1.31
CLIP1-201ENST00000302528 ZNF861PO60384 105 aa6.89□□□□□ -1.31
CLIP1-201ENST00000302528 BRCA2P51587 3418 aa6.89□□□□□ -1.31
CLIP1-201ENST00000302528 ZFYVE26Q68DK2 2539 aa6.89□□□□□ -1.31
CLIP1-201ENST00000302528 ABCA12Q86UK0 2595 aa6.89□□□□□ -1.31
CLIP1-201ENST00000302528 CSNK1G2-AS1Q8NCQ2 148 aa6.88□□□□□ -1.31
CLIP1-201ENST00000302528 PTPRBP23467 1997 aa6.88□□□□□ -1.31
CLIP1-201ENST00000302528 CAMK2N1Q7Z7J9 78 aa6.88□□□□□ -1.31
CLIP1-201ENST00000302528 Q8N1X5 172 aa6.88□□□□□ -1.31
CLIP1-201ENST00000302528 LINC00528Q8N1L1 170 aa6.88□□□□□ -1.31
CLIP1-201ENST00000302528 LINC00336Q6ZUF6 198 aa6.87□□□□□ -1.31
CLIP1-201ENST00000302528 SMR3BP02814 79 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-201ENST00000302528 KLKP1Q107X0 134 aa6.87□□□□□ -1.31
CLIP1-201ENST00000302528 IGF2RP11717 2491 aa6.87□□□□□ -1.31
CLIP1-201ENST00000302528 CHD9Q3L8U1 2897 aa6.86□□□□□ -1.31
CLIP1-201ENST00000302528 LITAFQ99732 161 aa6.86□□□□□ -1.31
CLIP1-201ENST00000302528 Q1T7F1 81 aa6.85□□□□□ -1.31
CLIP1-201ENST00000302528 MKI67P46013 3256 aaKnown RBP6.84□□□□□ -1.31
CLIP1-201ENST00000302528 A0A0G2JQZ4 141 aa6.84□□□□□ -1.31
CLIP1-201ENST00000302528 A0A1W2PNN7 141 aa6.84□□□□□ -1.31
CLIP1-201ENST00000302528 ANAPC11Q9NYG5 84 aa6.83□□□□□ -1.32
CLIP1-201ENST00000302528 Q8N377 158 aa6.82□□□□□ -1.32
CLIP1-201ENST00000302528 PIEZO1Q92508 2521 aa6.82□□□□□ -1.32
CLIP1-201ENST00000302528 PRRC2CQ9Y520 2896 aaKnown RBP6.81□□□□□ -1.32
CLIP1-201ENST00000302528 ACANP16112 2415 aa6.8□□□□□ -1.32
CLIP1-201ENST00000302528 H7BZZ5 65 aa6.8□□□□□ -1.32
CLIP1-201ENST00000302528 C15orf56Q8N910 161 aa6.8□□□□□ -1.32
CLIP1-201ENST00000302528 IGLV7-43P04211 117 aa6.79□□□□□ -1.32
CLIP1-201ENST00000302528 A0A087WTM6 91 aa6.79□□□□□ -1.32
CLIP1-201ENST00000302528 Q6ZSA8 131 aa6.78□□□□□ -1.32
CLIP1-201ENST00000302528 PKD1L2Q7Z442 2459 aa6.78□□□□□ -1.32
CLIP1-201ENST00000302528 M0R2T5 61 aa6.78□□□□□ -1.32
CLIP1-201ENST00000302528 SPANXA2-OT1Q8N9U9 137 aa6.78□□□□□ -1.32
CLIP1-201ENST00000302528 A0A0A0MQY5 61 aa6.76□□□□□ -1.33
CLIP1-201ENST00000302528 LAMA2P24043 3122 aaKnown RBP6.76□□□□□ -1.33
CLIP1-201ENST00000302528 C9orf163Q8N9P6 203 aa6.76□□□□□ -1.33
CLIP1-201ENST00000302528 RANBP2P49792 3224 aaKnown RBP6.76□□□□□ -1.33
CLIP1-201ENST00000302528 TRANK1O15050 2925 aa6.75□□□□□ -1.33
CLIP1-201ENST00000302528 PSORS1C2Q9UIG4 136 aa6.75□□□□□ -1.33
CLIP1-201ENST00000302528 SPRR4Q96PI1 79 aa6.74□□□□□ -1.33
CLIP1-201ENST00000302528 USP9XQ93008 2570 aaPredicted RBP6.74□□□□□ -1.33
CLIP1-201ENST00000302528 SETD2Q9BYW2 2564 aaPredicted RBP6.74□□□□□ -1.33
CLIP1-201ENST00000302528 A0A1B0GU33 70 aa6.73□□□□□ -1.33
CLIP1-201ENST00000302528 LAMA3Q16787 3333 aa6.73□□□□□ -1.33
CLIP1-201ENST00000302528 PRR34Q9NV39 138 aa6.73□□□□□ -1.33
CLIP1-201ENST00000302528 CEP295Q9C0D2 2601 aa6.73□□□□□ -1.33
CLIP1-201ENST00000302528 PRR26Q8N8Z3 221 aa6.72□□□□□ -1.33
CLIP1-201ENST00000302528 PLA2G2DQ9UNK4 145 aa6.72□□□□□ -1.33
CLIP1-201ENST00000302528 WIPF1O43516 503 aa6.72□□□□□ -1.33
CLIP1-201ENST00000302528 COL27A1Q8IZC6 1860 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-201ENST00000302528 K7EIL1 84 aa6.72□□□□□ -1.33
CLIP1-201ENST00000302528 TLX1NBP0CAT3 122 aa6.72□□□□□ -1.33
CLIP1-201ENST00000302528 EIF4EBP3O60516 100 aaPredicted RBP6.71□□□□□ -1.34
CLIP1-201ENST00000302528 KLK9Q2XQG4 91 aa6.7□□□□□ -1.34
CLIP1-201ENST00000302528 UNC80Q8N2C7 3258 aa6.7□□□□□ -1.34
CLIP1-201ENST00000302528 A0A1W2PNM2 257 aa6.69□□□□□ -1.34
CLIP1-201ENST00000302528 ANKRD11Q6UB99 2663 aaPredicted RBP6.69□□□□□ -1.34
CLIP1-201ENST00000302528 KRTAP10-11P60412 298 aa6.68□□□□□ -1.34
CLIP1-201ENST00000302528 IGLV7-46A0A075B6I9 117 aa6.67□□□□□ -1.34
CLIP1-201ENST00000302528 LINC00612Q8N6U2 182 aa6.65□□□□□ -1.34
CLIP1-201ENST00000302528 C19orf73Q9NVV2 129 aa6.65□□□□□ -1.35
CLIP1-201ENST00000302528 HRES1P13985 223 aa6.64□□□□□ -1.35
CLIP1-201ENST00000302528 H3BS24 57 aa6.63□□□□□ -1.35
CLIP1-201ENST00000302528 CNBPP62633 177 aaKnown RBP6.62□□□□□ -1.35
CLIP1-201ENST00000302528 CSAG1Q6PB30 78 aa6.62□□□□□ -1.35
CLIP1-201ENST00000302528 CDH23Q9H251 3354 aa6.62□□□□□ -1.35
CLIP1-201ENST00000302528 DMAC1Q96GE9 116 aa6.61□□□□□ -1.35
CLIP1-201ENST00000302528 CASC10Q5T4H9 136 aa6.61□□□□□ -1.35
CLIP1-201ENST00000302528 USP9YO00507 2555 aaPredicted RBP6.61□□□□□ -1.35
CLIP1-201ENST00000302528 SPINK7P58062 85 aa6.61□□□□□ -1.35
CLIP1-201ENST00000302528 CHD8Q9HCK8 2581 aa6.61□□□□□ -1.35
CLIP1-201ENST00000302528 CFAP54Q96N23 3096 aa6.59□□□□□ -1.35
CLIP1-201ENST00000302528 S4R3F8 94 aa6.59□□□□□ -1.35
CLIP1-201ENST00000302528 Q75L30 129 aa6.59□□□□□ -1.36
CLIP1-201ENST00000302528 DNAH14Q0VDD8 3507 aa6.58□□□□□ -1.36
CLIP1-201ENST00000302528 GIG44P09565 113 aaPredicted RBP6.57□□□□□ -1.36
CLIP1-201ENST00000302528 PRAC1Q96KF2 57 aa6.57□□□□□ -1.36
CLIP1-201ENST00000302528 OCR1Q9BZK8 76 aa6.56□□□□□ -1.36
CLIP1-201ENST00000302528 R4GN34 69 aa6.56□□□□□ -1.36
CLIP1-201ENST00000302528 MTORP42345 2549 aa6.56□□□□□ -1.36
CLIP1-201ENST00000302528 PRUNE2Q8WUY3 3088 aa6.55□□□□□ -1.36
CLIP1-201ENST00000302528 ZCCHC13Q8WW36 166 aaKnown RBP6.53□□□□□ -1.36
CLIP1-201ENST00000302528 TRIOO75962 3097 aa6.53□□□□□ -1.36
CLIP1-201ENST00000302528 LINC01558Q9Y6Z2 57 aa6.52□□□□□ -1.37
CLIP1-201ENST00000302528 TNP2Q05952 138 aa6.51□□□□□ -1.37
CLIP1-201ENST00000302528 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.51□□□□□ -1.37
CLIP1-201ENST00000302528 SPTBN4Q9H254 2564 aa6.5□□□□□ -1.37
CLIP1-201ENST00000302528 KRTAP10-3P60369 221 aa6.5□□□□□ -1.37
CLIP1-201ENST00000302528 Q8N9P0 234 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-201ENST00000302528 XIRP2A4UGR9 3374 aa6.49□□□□□ -1.37
CLIP1-201ENST00000302528 H1FX-AS1Q4G0G2 97 aa6.48□□□□□ -1.37
CLIP1-201ENST00000302528 LAMA1P25391 3075 aa6.48□□□□□ -1.37
CLIP1-201ENST00000302528 FAM229BQ4G0N7 80 aa6.47□□□□□ -1.37
CLIP1-201ENST00000302528 POLQO75417 2590 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms