RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SDIM1Q6ZPB5 146 aa10.48□□□□□ -0.73
USP4-201ENST00000265560 VPS25Q9BRG1 176 aa10.48□□□□□ -0.73
USP4-201ENST00000265560 hADV29S1A0JD25 119 aa10.47□□□□□ -0.73
USP4-201ENST00000265560 COX7BP24311 80 aa10.47□□□□□ -0.73
USP4-201ENST00000265560 Q6ZQY7 126 aa10.47□□□□□ -0.73
USP4-201ENST00000265560 PHF5AQ7RTV0 110 aaKnown RBP10.46□□□□□ -0.73
USP4-201ENST00000265560 SACSQ9NZJ4 4579 aa10.46□□□□□ -0.74
USP4-201ENST00000265560 IGLV1-50A0A075B6I6 118 aa10.46□□□□□ -0.74
USP4-201ENST00000265560 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.45□□□□□ -0.74
USP4-201ENST00000265560 KRTAP11-1Q8IUC1 163 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 ORMDL1Q9P0S3 153 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 ALMS1Q8TCU4 4167 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 DNAH11Q96DT5 4516 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 RTL8CO15255 209 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 KCNQ1DNQ9H478 68 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 PLA2G2DQ9UNK4 145 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 C3orf84H3BNL1 204 aa10.44□□□□□ -0.74
USP4-201ENST00000265560 ELOF1P60002 83 aaKnown RBP10.44□□□□□ -0.74
USP4-201ENST00000265560 FAT2Q9NYQ8 4349 aa10.42□□□□□ -0.74
USP4-201ENST00000265560 LINC00528Q8N1L1 170 aa10.41□□□□□ -0.74
USP4-201ENST00000265560 DEFB105AQ8NG35 78 aa10.41□□□□□ -0.74
USP4-201ENST00000265560 C14orf132Q9NPU4 83 aa10.41□□□□□ -0.74
USP4-201ENST00000265560 IGLV5-37A0A075B6J1 123 aa10.4□□□□□ -0.74
USP4-201ENST00000265560 J3QR89 54 aa10.4□□□□□ -0.74
USP4-201ENST00000265560 DNAH5Q8TE73 4624 aa10.4□□□□□ -0.75
USP4-201ENST00000265560 UBE2BP63146 152 aa10.39□□□□□ -0.75
USP4-201ENST00000265560 IGLV5-52A0A0A0MRZ9 124 aa10.39□□□□□ -0.75
USP4-201ENST00000265560 ETDCA0A1B0GVM5 59 aa10.39□□□□□ -0.75
USP4-201ENST00000265560 KRTAP10-2P60368 255 aa10.39□□□□□ -0.75
USP4-201ENST00000265560 SNCGO76070 127 aa10.38□□□□□ -0.75
USP4-201ENST00000265560 PRLHP81277 87 aa10.38□□□□□ -0.75
USP4-201ENST00000265560 LINC01600Q96MT4 127 aa10.38□□□□□ -0.75
USP4-201ENST00000265560 Q9BRP9 147 aa10.38□□□□□ -0.75
USP4-201ENST00000265560 KMT2CQ8NEZ4 4911 aaKnown RBP10.37□□□□□ -0.75
USP4-201ENST00000265560 DNAH8Q96JB1 4490 aa10.37□□□□□ -0.75
USP4-201ENST00000265560 HAMPP81172 84 aa10.37□□□□□ -0.75
USP4-201ENST00000265560 REG3GQ6UW15 175 aa10.36□□□□□ -0.75
USP4-201ENST00000265560 KRTAP4-16G5E9R7 235 aaPredicted RBP10.36□□□□□ -0.75
USP4-201ENST00000265560 ERC2-IT1O76042 136 aa10.36□□□□□ -0.75
USP4-201ENST00000265560 PKHD1P08F94 4074 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 PKD1P98161 4303 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 B5MCH6 92 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 ST20-AS1Q8NBB2 130 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 LAMTOR3Q9UHA4 124 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 A0A1B0GX51 115 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 Q6ZRX8 168 aa10.35□□□□□ -0.75
USP4-201ENST00000265560 TMEM256-PLSCR3K7ERE1 68 aa10.34□□□□□ -0.75
USP4-201ENST00000265560 PRYO14603 147 aa10.34□□□□□ -0.75
USP4-201ENST00000265560 FAM19A1Q7Z5A9 133 aa10.34□□□□□ -0.75
USP4-201ENST00000265560 C3orf22Q8N5N4 141 aa10.33□□□□□ -0.76
USP4-201ENST00000265560 GAGE2AQ6NT46 116 aa10.33□□□□□ -0.76
USP4-201ENST00000265560 SPRR1AP35321 89 aa10.32□□□□□ -0.76
USP4-201ENST00000265560 SPACA4Q8TDM5 124 aa10.32□□□□□ -0.76
USP4-201ENST00000265560 TRBV7-6A0A0J9YX20 115 aa10.32□□□□□ -0.76
USP4-201ENST00000265560 HIGD2AQ9BW72 106 aa10.32□□□□□ -0.76
USP4-201ENST00000265560 CDIP1Q9H305 208 aa10.32□□□□□ -0.76
USP4-201ENST00000265560 CBY1Q9Y3M2 126 aa10.31□□□□□ -0.76
USP4-201ENST00000265560 FAM30AQ9NZY2 134 aa10.29□□□□□ -0.76
USP4-201ENST00000265560 LINC00474Q9P2X8 69 aa10.29□□□□□ -0.76
USP4-201ENST00000265560 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.29□□□□□ -0.76
USP4-201ENST00000265560 SMCR5Q8TEV8 140 aa10.27□□□□□ -0.77
USP4-201ENST00000265560 INAFM2P0DMQ5 153 aa10.26□□□□□ -0.77
USP4-201ENST00000265560 XGP55808 180 aa10.25□□□□□ -0.77
USP4-201ENST00000265560 Q8N377 158 aa10.25□□□□□ -0.77
USP4-201ENST00000265560 OBSCN-AS1Q96MR7 158 aa10.25□□□□□ -0.77
USP4-201ENST00000265560 EPM2AB3EWF7 344 aa10.24□□□□□ -0.77
USP4-201ENST00000265560 RBM3P98179 157 aaKnown RBP10.24□□□□□ -0.77
USP4-201ENST00000265560 DHRS4-AS1Q9P1J3 65 aa10.24□□□□□ -0.77
USP4-201ENST00000265560 MT-ATP8P03928 68 aa10.24□□□□□ -0.77
USP4-201ENST00000265560 NDUFV3P56181 108 aaKnown RBP10.23□□□□□ -0.77
USP4-201ENST00000265560 LINC01547P58512 204 aaPredicted RBP10.22□□□□□ -0.77
USP4-201ENST00000265560 LRP1BQ9NZR2 4599 aa10.22□□□□□ -0.77
USP4-201ENST00000265560 UBE2AP49459 152 aa10.22□□□□□ -0.77
USP4-201ENST00000265560 KRTAP10-1P60331 282 aa10.22□□□□□ -0.77
USP4-201ENST00000265560 PKIGQ9Y2B9 76 aa10.21□□□□□ -0.77
USP4-201ENST00000265560 A0A0G2JQZ4 141 aa10.21□□□□□ -0.78
USP4-201ENST00000265560 JMJD7-PLA2G4BH0Y9G9 81 aa10.21□□□□□ -0.78
USP4-201ENST00000265560 LCE6AA0A183 80 aa10.2□□□□□ -0.78
USP4-201ENST00000265560 RYR2Q92736 4967 aa10.19□□□□□ -0.78
USP4-201ENST00000265560 CIRBP-AS1Q8TBR5 109 aa10.18□□□□□ -0.78
USP4-201ENST00000265560 DSCR8Q96T75 97 aa10.18□□□□□ -0.78
USP4-201ENST00000265560 SIGMAR1Q99720 223 aa10.18□□□□□ -0.78
USP4-201ENST00000265560 PSORS1C2Q9UIG4 136 aa10.18□□□□□ -0.78
USP4-201ENST00000265560 LINC00846Q9NV44 126 aa10.18□□□□□ -0.78
USP4-201ENST00000265560 PLAC8Q9NZF1 115 aa10.17□□□□□ -0.78
USP4-201ENST00000265560 CCKP06307 115 aa10.16□□□□□ -0.78
USP4-201ENST00000265560 C1orf137Q5JT78 98 aa10.16□□□□□ -0.78
USP4-201ENST00000265560 Q6ZQT0 140 aa10.16□□□□□ -0.78
USP4-201ENST00000265560 SCXQ7RTU7 201 aa10.15□□□□□ -0.78
USP4-201ENST00000265560 BCE1O60756 84 aa10.15□□□□□ -0.79
USP4-201ENST00000265560 FAM240AA0A1B0GVK7 77 aa10.13□□□□□ -0.79
USP4-201ENST00000265560 IGLV5-48A0A075B6I7 105 aa10.11□□□□□ -0.79
USP4-201ENST00000265560 GHRHP01286 108 aa10.11□□□□□ -0.79
USP4-201ENST00000265560 SMIM29Q86T20 159 aa10.11□□□□□ -0.79
USP4-201ENST00000265560 ANAPC11Q9NYG5 84 aa10.11□□□□□ -0.79
USP4-201ENST00000265560 TRBV7-4A0A0J9YYF1 115 aa10.1□□□□□ -0.79
USP4-201ENST00000265560 ACYP1P07311 99 aa10.09□□□□□ -0.79
USP4-201ENST00000265560 RYR3Q15413 4870 aa10.09□□□□□ -0.79
USP4-201ENST00000265560 VPS13BQ7Z7G8 4022 aa10.09□□□□□ -0.79
USP4-201ENST00000265560 KRTAP13-1Q8IUC0 172 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 187.6 ms