RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CSPG4Q6UVK1 2322 aa5.48□□□□□ -1.53
PTCD3-201ENST00000254630 SPANXA2-OT1Q8N9U9 137 aa5.48□□□□□ -1.53
PTCD3-201ENST00000254630 A0A0D9SG42 100 aa5.48□□□□□ -1.53
PTCD3-201ENST00000254630 LINC01554Q52M75 96 aa5.48□□□□□ -1.53
PTCD3-201ENST00000254630 Q6ZSA8 131 aa5.48□□□□□ -1.53
PTCD3-201ENST00000254630 H7BZZ5 65 aa5.47□□□□□ -1.53
PTCD3-201ENST00000254630 IGLV7-46A0A075B6I9 117 aa5.46□□□□□ -1.53
PTCD3-201ENST00000254630 PRR26Q8N8Z3 221 aa5.46□□□□□ -1.54
PTCD3-201ENST00000254630 PTPN13Q12923 2485 aa5.46□□□□□ -1.54
PTCD3-201ENST00000254630 CDC42SE1Q9NRR8 79 aa5.45□□□□□ -1.54
PTCD3-201ENST00000254630 NAV2Q8IVL1 2488 aa5.45□□□□□ -1.54
PTCD3-201ENST00000254630 FAM229BQ4G0N7 80 aa5.43□□□□□ -1.54
PTCD3-201ENST00000254630 PLAC8Q9NZF1 115 aa5.43□□□□□ -1.54
PTCD3-201ENST00000254630 WIPF1O43516 503 aa5.43□□□□□ -1.54
PTCD3-201ENST00000254630 SPG11Q96JI7 2443 aa5.43□□□□□ -1.54
PTCD3-201ENST00000254630 SRCAPQ6ZRS2 3230 aa5.42□□□□□ -1.54
PTCD3-201ENST00000254630 CR1P17927 2039 aa5.42□□□□□ -1.54
PTCD3-201ENST00000254630 IGF2RP11717 2491 aa5.41□□□□□ -1.54
PTCD3-201ENST00000254630 PIEZO2Q9H5I5 2752 aa5.41□□□□□ -1.54
PTCD3-201ENST00000254630 S4R3F8 94 aa5.39□□□□□ -1.55
PTCD3-201ENST00000254630 M0R2T5 61 aa5.38□□□□□ -1.55
PTCD3-201ENST00000254630 OCR1Q9BZK8 76 aa5.37□□□□□ -1.55
PTCD3-201ENST00000254630 ACACBO00763 2458 aa5.37□□□□□ -1.55
PTCD3-201ENST00000254630 KTN1-AS1Q86SY8 53 aa5.37□□□□□ -1.55
PTCD3-201ENST00000254630 ZCCHC13Q8WW36 166 aaKnown RBP5.37□□□□□ -1.55
PTCD3-201ENST00000254630 HRES1P13985 223 aa5.36□□□□□ -1.55
PTCD3-201ENST00000254630 TTC28Q96AY4 2481 aa5.35□□□□□ -1.55
PTCD3-201ENST00000254630 ATRXP46100 2492 aa5.35□□□□□ -1.55
PTCD3-201ENST00000254630 MMP24-AS1A0A0U1RRL7 71 aa5.34□□□□□ -1.55
PTCD3-201ENST00000254630 BDP1A6H8Y1 2624 aa5.34□□□□□ -1.55
PTCD3-201ENST00000254630 LRRK2Q5S007 2527 aa5.34□□□□□ -1.56
PTCD3-201ENST00000254630 Q1T7F1 81 aa5.34□□□□□ -1.56
PTCD3-201ENST00000254630 Q5VSD8 79 aa5.33□□□□□ -1.56
PTCD3-201ENST00000254630 LCA10Q71F78 164 aa5.33□□□□□ -1.56
PTCD3-201ENST00000254630 Q8NDZ9 215 aa5.33□□□□□ -1.56
PTCD3-201ENST00000254630 SPRR1AP35321 89 aa5.32□□□□□ -1.56
PTCD3-201ENST00000254630 NCOR2Q9Y618 2525 aa5.32□□□□□ -1.56
PTCD3-201ENST00000254630 A0A1B0GU33 70 aa5.31□□□□□ -1.56
PTCD3-201ENST00000254630 CAMK2N1Q7Z7J9 78 aa5.31□□□□□ -1.56
PTCD3-201ENST00000254630 LINC00483Q53H64 154 aa5.3□□□□□ -1.56
PTCD3-201ENST00000254630 ANKRD17O75179 2603 aaKnown RBP5.3□□□□□ -1.56
PTCD3-201ENST00000254630 ABCA2Q9BZC7 2435 aa5.29□□□□□ -1.56
PTCD3-201ENST00000254630 LCE6AA0A183 80 aa5.29□□□□□ -1.56
PTCD3-201ENST00000254630 Q5W150 140 aa5.28□□□□□ -1.56
PTCD3-201ENST00000254630 Q75L30 129 aa5.28□□□□□ -1.56
PTCD3-201ENST00000254630 KRTAP1-5Q9BYS1 174 aa5.28□□□□□ -1.56
PTCD3-201ENST00000254630 KRTAP10-1P60331 282 aa5.27□□□□□ -1.57
PTCD3-201ENST00000254630 CSAG1Q6PB30 78 aa5.27□□□□□ -1.57
PTCD3-201ENST00000254630 SPRR1BP22528 89 aa5.27□□□□□ -1.57
PTCD3-201ENST00000254630 Q8N9P0 234 aaPredicted RBP5.26□□□□□ -1.57
PTCD3-201ENST00000254630 KRTAP26-1Q6PEX3 210 aa5.26□□□□□ -1.57
PTCD3-201ENST00000254630 DMAC1Q96GE9 116 aa5.26□□□□□ -1.57
PTCD3-201ENST00000254630 SEC61BP60468 96 aaKnown RBP5.25□□□□□ -1.57
PTCD3-201ENST00000254630 KRTAP10-2P60368 255 aa5.25□□□□□ -1.57
PTCD3-201ENST00000254630 SONP18583 2426 aaKnown RBP5.24□□□□□ -1.57
PTCD3-201ENST00000254630 LINC00472Q9H8W2 130 aa5.24□□□□□ -1.57
PTCD3-201ENST00000254630 CCDC168Q8NDH2 2452 aa5.24□□□□□ -1.57
PTCD3-201ENST00000254630 LINC01558Q9Y6Z2 57 aa5.23□□□□□ -1.57
PTCD3-201ENST00000254630 LUZP6Q538Z0 58 aa5.22□□□□□ -1.57
PTCD3-201ENST00000254630 SPINK7P58062 85 aa5.22□□□□□ -1.57
PTCD3-201ENST00000254630 GOLGB1Q14789 3259 aaKnown RBP5.21□□□□□ -1.58
PTCD3-201ENST00000254630 ZNF462Q96JM2 2506 aa5.19□□□□□ -1.58
PTCD3-201ENST00000254630 NOTCH2Q04721 2471 aa5.18□□□□□ -1.58
PTCD3-201ENST00000254630 OXTP01178 125 aa5.17□□□□□ -1.58
PTCD3-201ENST00000254630 FP248Q71RG6 208 aaPredicted RBP5.16□□□□□ -1.58
PTCD3-201ENST00000254630 TLN1Q9Y490 2541 aaKnown RBP5.16□□□□□ -1.58
PTCD3-201ENST00000254630 R4GN34 69 aa5.16□□□□□ -1.58
PTCD3-201ENST00000254630 WDR87Q6ZQQ6 2873 aa5.14□□□□□ -1.59
PTCD3-201ENST00000254630 PANO1I0J062 215 aa5.13□□□□□ -1.59
PTCD3-201ENST00000254630 Q5XG85 94 aa5.13□□□□□ -1.59
PTCD3-201ENST00000254630 Q5VV11 94 aa5.12□□□□□ -1.59
PTCD3-201ENST00000254630 CYSTM1Q9H1C7 97 aa5.12□□□□□ -1.59
PTCD3-201ENST00000254630 BPTFQ12830 3046 aa5.12□□□□□ -1.59
PTCD3-201ENST00000254630 Q6ZR54 194 aa5.12□□□□□ -1.59
PTCD3-201ENST00000254630 H1FX-AS1Q4G0G2 97 aa5.12□□□□□ -1.59
PTCD3-201ENST00000254630 DNAH12Q6ZR08 3092 aa5.1□□□□□ -1.59
PTCD3-201ENST00000254630 M0QZ58 72 aa5.1□□□□□ -1.59
PTCD3-201ENST00000254630 ADM2Q7Z4H4 148 aa5.1□□□□□ -1.59
PTCD3-201ENST00000254630 CACNA1AO00555 2505 aa5.1□□□□□ -1.59
PTCD3-201ENST00000254630 KRTAP4-16G5E9R7 235 aaPredicted RBP5.1□□□□□ -1.59
PTCD3-201ENST00000254630 ANKRD11Q6UB99 2663 aaPredicted RBP5.09□□□□□ -1.59
PTCD3-201ENST00000254630 ABCA12Q86UK0 2595 aa5.09□□□□□ -1.59
PTCD3-201ENST00000254630 C2CD3Q4AC94 2353 aa5.09□□□□□ -1.59
PTCD3-201ENST00000254630 DOPEY1Q5JWR5 2465 aa5.09□□□□□ -1.59
PTCD3-201ENST00000254630 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
PTCD3-201ENST00000254630 ROMO1P60602 79 aa5.08□□□□□ -1.6
PTCD3-201ENST00000254630 A0A087X002 238 aa5.07□□□□□ -1.6
PTCD3-201ENST00000254630 FN1P02751 2386 aaKnown RBP5.07□□□□□ -1.6
PTCD3-201ENST00000254630 PRAC1Q96KF2 57 aa5.07□□□□□ -1.6
PTCD3-201ENST00000254630 PIEZO1Q92508 2521 aa5.06□□□□□ -1.6
PTCD3-201ENST00000254630 RPL37P61927 97 aaKnown RBP5.06□□□□□ -1.6
PTCD3-201ENST00000254630 CENPFP49454 3210 aa5.06□□□□□ -1.6
PTCD3-201ENST00000254630 RPS29P62273 56 aaKnown RBP5.04□□□□□ -1.6
PTCD3-201ENST00000254630 KRTAP29-1A8MX34 341 aaPredicted RBP5.01□□□□□ -1.61
PTCD3-201ENST00000254630 Q6ZRN7 208 aaPredicted RBP5.01□□□□□ -1.61
PTCD3-201ENST00000254630 SPATA8Q6RVD6 105 aa5.01□□□□□ -1.61
PTCD3-201ENST00000254630 KRTAP11-1Q8IUC1 163 aa5.01□□□□□ -1.61
PTCD3-201ENST00000254630 ASB16-AS1Q495Z4 193 aa5.01□□□□□ -1.61
PTCD3-201ENST00000254630 PKD1L2Q7Z442 2459 aa5.01□□□□□ -1.61
PTCD3-201ENST00000254630 C5orf42Q9H799 3197 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms