RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 LINC01546A6NGU7 62 aa7.53□□□□□ -1.2
MSH6-201ENST00000234420 MRPL34Q9BQ48 92 aaKnown RBP7.53□□□□□ -1.2
MSH6-201ENST00000234420 Q6ZRX8 168 aa7.52□□□□□ -1.21
MSH6-201ENST00000234420 KIF25-AS1Q9Y6Z4 181 aa7.51□□□□□ -1.21
MSH6-201ENST00000234420 IGLV1-50A0A075B6I6 118 aa7.5□□□□□ -1.21
MSH6-201ENST00000234420 IGF2RP11717 2491 aa7.48□□□□□ -1.21
MSH6-201ENST00000234420 PRO3102Q9H379 93 aa7.48□□□□□ -1.21
MSH6-201ENST00000234420 Q5VSD8 79 aa7.47□□□□□ -1.21
MSH6-201ENST00000234420 KRTAP10-11P60412 298 aa7.47□□□□□ -1.21
MSH6-201ENST00000234420 A0A0A0MQY5 61 aa7.47□□□□□ -1.21
MSH6-201ENST00000234420 PRAC1Q96KF2 57 aa7.46□□□□□ -1.21
MSH6-201ENST00000234420 REV3LO60673 3130 aa7.46□□□□□ -1.22
MSH6-201ENST00000234420 USP9XQ93008 2570 aaPredicted RBP7.46□□□□□ -1.22
MSH6-201ENST00000234420 ABCA12Q86UK0 2595 aa7.45□□□□□ -1.22
MSH6-201ENST00000234420 Q1T7F1 81 aa7.45□□□□□ -1.22
MSH6-201ENST00000234420 IGLV5-45A0A087WSX0 123 aa7.45□□□□□ -1.22
MSH6-201ENST00000234420 LINC00528Q8N1L1 170 aa7.44□□□□□ -1.22
MSH6-201ENST00000234420 PLA2G2DQ9UNK4 145 aa7.44□□□□□ -1.22
MSH6-201ENST00000234420 K7EIL1 84 aa7.43□□□□□ -1.22
MSH6-201ENST00000234420 FLG2Q5D862 2391 aaPredicted RBP7.43□□□□□ -1.22
MSH6-201ENST00000234420 Q6ZSA8 131 aa7.42□□□□□ -1.22
MSH6-201ENST00000234420 CELSR3Q9NYQ7 3312 aa7.42□□□□□ -1.22
MSH6-201ENST00000234420 A0A0G2JQZ4 141 aa7.41□□□□□ -1.22
MSH6-201ENST00000234420 A0A1W2PNN7 141 aa7.41□□□□□ -1.22
MSH6-201ENST00000234420 C8orf17Q9NRJ1 99 aa7.4□□□□□ -1.22
MSH6-201ENST00000234420 IGLV5-48A0A075B6I7 105 aa7.4□□□□□ -1.22
MSH6-201ENST00000234420 LITAFQ99732 161 aa7.39□□□□□ -1.23
MSH6-201ENST00000234420 COL4A2P08572 1712 aa7.39□□□□□ -1.23
MSH6-201ENST00000234420 BRCA2P51587 3418 aa7.39□□□□□ -1.23
MSH6-201ENST00000234420 FAM104AQ969W3 186 aa7.39□□□□□ -1.23
MSH6-201ENST00000234420 Q8N1X5 172 aa7.39□□□□□ -1.23
MSH6-201ENST00000234420 CAMK2N1Q7Z7J9 78 aa7.38□□□□□ -1.23
MSH6-201ENST00000234420 C15orf56Q8N910 161 aa7.38□□□□□ -1.23
MSH6-201ENST00000234420 NAV2Q8IVL1 2488 aa7.37□□□□□ -1.23
MSH6-201ENST00000234420 C9orf163Q8N9P6 203 aa7.37□□□□□ -1.23
MSH6-201ENST00000234420 IGFL1Q6UW32 110 aa7.36□□□□□ -1.23
MSH6-201ENST00000234420 CSAG1Q6PB30 78 aa7.36□□□□□ -1.23
MSH6-201ENST00000234420 PKD1L2Q7Z442 2459 aa7.35□□□□□ -1.23
MSH6-201ENST00000234420 PRR26Q8N8Z3 221 aa7.35□□□□□ -1.23
MSH6-201ENST00000234420 SPANXA2-OT1Q8N9U9 137 aa7.34□□□□□ -1.23
MSH6-201ENST00000234420 A0A1B0GVX0 72 aa7.33□□□□□ -1.24
MSH6-201ENST00000234420 MKI67P46013 3256 aaKnown RBP7.33□□□□□ -1.24
MSH6-201ENST00000234420 SPTBN4Q9H254 2564 aa7.33□□□□□ -1.24
MSH6-201ENST00000234420 EIF4EBP3O60516 100 aaPredicted RBP7.33□□□□□ -1.24
MSH6-201ENST00000234420 NCOR2Q9Y618 2525 aa7.33□□□□□ -1.24
MSH6-201ENST00000234420 SETD2Q9BYW2 2564 aaPredicted RBP7.32□□□□□ -1.24
MSH6-201ENST00000234420 POLQO75417 2590 aa7.32□□□□□ -1.24
MSH6-201ENST00000234420 Q8NAQ8 132 aa7.31□□□□□ -1.24
MSH6-201ENST00000234420 FAM229BQ4G0N7 80 aa7.31□□□□□ -1.24
MSH6-201ENST00000234420 LINC00483Q53H64 154 aa7.3□□□□□ -1.24
MSH6-201ENST00000234420 PRRC2CQ9Y520 2896 aaKnown RBP7.3□□□□□ -1.24
MSH6-201ENST00000234420 Q5XG85 94 aa7.3□□□□□ -1.24
MSH6-201ENST00000234420 A0A087WTM6 91 aa7.3□□□□□ -1.24
MSH6-201ENST00000234420 DNAH14Q0VDD8 3507 aa7.29□□□□□ -1.24
MSH6-201ENST00000234420 IGLV7-46A0A075B6I9 117 aa7.29□□□□□ -1.24
MSH6-201ENST00000234420 USP24Q9UPU5 2620 aa7.29□□□□□ -1.24
MSH6-201ENST00000234420 Q75L30 129 aa7.28□□□□□ -1.24
MSH6-201ENST00000234420 Q8N377 158 aa7.28□□□□□ -1.24
MSH6-201ENST00000234420 CDH23Q9H251 3354 aa7.25□□□□□ -1.25
MSH6-201ENST00000234420 ZNF861PO60384 105 aa7.24□□□□□ -1.25
MSH6-201ENST00000234420 TLX1NBP0CAT3 122 aa7.24□□□□□ -1.25
MSH6-201ENST00000234420 LAMA2P24043 3122 aaKnown RBP7.24□□□□□ -1.25
MSH6-201ENST00000234420 DMAC1Q96GE9 116 aa7.24□□□□□ -1.25
MSH6-201ENST00000234420 A0A1B0GU33 70 aa7.24□□□□□ -1.25
MSH6-201ENST00000234420 GVQW2A0A096LPI5 108 aaPredicted RBP7.23□□□□□ -1.25
MSH6-201ENST00000234420 KCNQ1DNQ9H478 68 aa7.23□□□□□ -1.25
MSH6-201ENST00000234420 SPINK7P58062 85 aa7.23□□□□□ -1.25
MSH6-201ENST00000234420 CASC10Q5T4H9 136 aa7.23□□□□□ -1.25
MSH6-201ENST00000234420 TNP2Q05952 138 aa7.22□□□□□ -1.25
MSH6-201ENST00000234420 PSORS1C2Q9UIG4 136 aa7.22□□□□□ -1.25
MSH6-201ENST00000234420 SZT2Q5T011 3432 aa7.22□□□□□ -1.25
MSH6-201ENST00000234420 MTORP42345 2549 aa7.22□□□□□ -1.25
MSH6-201ENST00000234420 FP248Q71RG6 208 aaPredicted RBP7.21□□□□□ -1.25
MSH6-201ENST00000234420 KRTAP10-3P60369 221 aa7.21□□□□□ -1.25
MSH6-201ENST00000234420 LAMA3Q16787 3333 aa7.21□□□□□ -1.26
MSH6-201ENST00000234420 KRTAP16-1A8MUX0 517 aa7.21□□□□□ -1.26
MSH6-201ENST00000234420 IGLV7-43P04211 117 aa7.2□□□□□ -1.26
MSH6-201ENST00000234420 OCR1Q9BZK8 76 aa7.2□□□□□ -1.26
MSH6-201ENST00000234420 CFAP54Q96N23 3096 aa7.17□□□□□ -1.26
MSH6-201ENST00000234420 Q8N9P0 234 aaPredicted RBP7.17□□□□□ -1.26
MSH6-201ENST00000234420 H3BNG1 76 aa7.16□□□□□ -1.26
MSH6-201ENST00000234420 Q5VV11 94 aa7.16□□□□□ -1.26
MSH6-201ENST00000234420 A0A1W2PNM2 257 aa7.16□□□□□ -1.26
MSH6-201ENST00000234420 CYSTM1Q9H1C7 97 aa7.15□□□□□ -1.27
MSH6-201ENST00000234420 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
MSH6-201ENST00000234420 FASNP49327 2511 aaKnown RBP7.13□□□□□ -1.27
MSH6-201ENST00000234420 VCANP13611 3396 aa7.12□□□□□ -1.27
MSH6-201ENST00000234420 ANKRD11Q6UB99 2663 aaPredicted RBP7.12□□□□□ -1.27
MSH6-201ENST00000234420 FREM2Q5SZK8 3169 aa7.11□□□□□ -1.27
MSH6-201ENST00000234420 RANBP2P49792 3224 aaKnown RBP7.11□□□□□ -1.27
MSH6-201ENST00000234420 LINC00612Q8N6U2 182 aa7.1□□□□□ -1.27
MSH6-201ENST00000234420 S4R3F8 94 aa7.1□□□□□ -1.27
MSH6-201ENST00000234420 HRES1P13985 223 aa7.09□□□□□ -1.27
MSH6-201ENST00000234420 SPEGQ15772 3267 aa7.09□□□□□ -1.27
MSH6-201ENST00000234420 PRUNE2Q8WUY3 3088 aa7.08□□□□□ -1.28
MSH6-201ENST00000234420 PLAC4Q8WY50 150 aa7.07□□□□□ -1.28
MSH6-201ENST00000234420 UNC80Q8N2C7 3258 aa7.04□□□□□ -1.28
MSH6-201ENST00000234420 OXTP01178 125 aa7.02□□□□□ -1.29
MSH6-201ENST00000234420 ROMO1P60602 79 aa7.01□□□□□ -1.29
MSH6-201ENST00000234420 CHD8Q9HCK8 2581 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms