RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SS18L2Q9UHA2 77 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 DOPEY2Q9Y3R5 2298 aa2.03□□□□□ -2.08
LINC00560-201ENST00000564593 SPG11Q96JI7 2443 aa2.03□□□□□ -2.09
LINC00560-201ENST00000564593 HECTD1Q9ULT8 2610 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TRBV7-3A0A075B6L6 115 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TRAV12-3A0A0B4J271 114 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 LOC107984156A0A0G2JMH3 177 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TRBV10-1A0A0K0K1A3 114 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 A8MUN3 132 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TIMM17BO60830 172 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 IFITM1P13164 125 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 POLR2KP53803 58 aaKnown RBP2.02□□□□□ -2.09
LINC00560-201ENST00000564593 FXYD2P54710 66 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 ARL17AQ8IVW1 177 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 C10orf126Q8N4M7 172 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 RPL39LQ96EH5 51 aaKnown RBP2.02□□□□□ -2.09
LINC00560-201ENST00000564593 UPK3BQ9BT76 320 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TIMM21Q9BVV7 248 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 PRO1854Q9UHT4 67 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 LRRK2Q5S007 2527 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 ZZEF1O43149 2961 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 KALRNO60229 2985 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 HELZ2Q9BYK8 2649 aaKnown RBP2.02□□□□□ -2.09
LINC00560-201ENST00000564593 CR1P17927 2039 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 DMXL2Q8TDJ6 3036 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 IGKV3-7A0A075B6H7 116 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 IGKV2D-26A0A0A0MRZ7 120 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 IGIPA6NJ69 53 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 A8MTW9 85 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 M0QY20 66 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 LST1O00453 97 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 P0DMU3 169 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 FAM231AP0DMU4 169 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 FAM231CP0DMU5 169 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 UBE2D1P51668 147 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 FXYD7P58549 80 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 ATXN8Q156A1 80 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 TEN1Q86WV5 123 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 Q8N2B8 174 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 ANKRD29Q8N6D5 301 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 PPDPFLQ8WWR9 84 aa2.02□□□□□ -2.09
LINC00560-201ENST00000564593 DMDP11532 3685 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 USP9YO00507 2555 aaPredicted RBP2.01□□□□□ -2.09
LINC00560-201ENST00000564593 A0A0J9YY99 117 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 C19orf84I3L1E1 186 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 K7ERJ3 54 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 COX7A2LO14548 114 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 GNRH2O43555 120 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 BLCAPP62952 87 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 MRPS36P82909 103 aaKnown RBP2.01□□□□□ -2.09
LINC00560-201ENST00000564593 SPINK13Q1W4C9 94 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 DEFB112Q30KQ8 113 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 NDUFA11Q86Y39 141 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 ERG28Q9UKR5 140 aa2.01□□□□□ -2.09
LINC00560-201ENST00000564593 KLK5Q9Y337 293 aaPredicted RBP2.01□□□□□ -2.09
LINC00560-201ENST00000564593 C2CD3Q4AC94 2353 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 ITPR1Q14643 2758 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 TRAV4A0A0B4J268 109 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 IGHV1-58A0A0C4DH39 117 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 H3BT86 120 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 UBE2L6O14933 153 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 SNCGO76070 127 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 IGHV3-30P01768 117 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 IGHV3-30-5P0DP03 117 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 TSPEAR-AS2P59090 65 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 UBE2D3P61077 147 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 UBE2D2P62837 147 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 MIAQ16674 131 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 DEFB113Q30KQ7 82 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 CFAP126Q5VTH2 177 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 TMEM263Q8WUH6 116 aaKnown RBP2□□□□□ -2.09
LINC00560-201ENST00000564593 CARD19Q96LW7 228 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 SPANXCQ9NY87 97 aa2□□□□□ -2.09
LINC00560-201ENST00000564593 IGSF10Q6WRI0 2623 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 TRAV12-2A0A075B6T6 113 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 TRGV4A0A0C4DH28 118 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 TRBV30A0A0K0K1B3 111 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 NDUFA1O15239 70 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 ACYP1P07311 99 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 DEFB131AP59861 70 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 ETDBQ3ZM63 59 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 AMTNQ6UX39 209 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 ZNF418Q8TF45 676 aaPredicted RBP1.99□□□□□ -2.09
LINC00560-201ENST00000564593 AMELXQ99217 191 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 NAA38Q9BRA0 125 aaKnown RBP1.99□□□□□ -2.09
LINC00560-201ENST00000564593 C16orf95Q9H693 158 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 NDUFA12Q9UI09 145 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 SORL1Q92673 2214 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 FLNCQ14315 2725 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 FBN2P35556 2912 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 DCHS2Q6V1P9 2916 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 WNK1Q9H4A3 2382 aa1.99□□□□□ -2.09
LINC00560-201ENST00000564593 IGHV3-73A0A0B4J1V6 119 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 TRAV13-2A0A0B4J235 113 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 HTN1P15515 57 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 RPL39P62891 51 aaKnown RBP1.98□□□□□ -2.09
LINC00560-201ENST00000564593 LINC01600Q96MT4 127 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 TTTY13Q9BZ97 58 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 UBE2D4Q9Y2X8 147 aa1.98□□□□□ -2.09
LINC00560-201ENST00000564593 TLN2Q9Y4G6 2542 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms