RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 CR1P17927 2039 aa5.46□□□□□ -1.53
USP3-211ENST00000559257 IGLV1-40P01703 118 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 USMG5Q96IX5 58 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 ICE1Q9Y2F5 2266 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 WDFY3Q8IZQ1 3526 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 DNAJC9-AS1A6NH13 148 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 H3BUA1 57 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 REG3AQ06141 175 aa5.46□□□□□ -1.54
USP3-211ENST00000559257 GPR179Q6PRD1 2367 aa5.45□□□□□ -1.54
USP3-211ENST00000559257 LYNX1G3V0Z9 82 aa5.45□□□□□ -1.54
USP3-211ENST00000559257 IGKV3-20P01619 116 aa5.45□□□□□ -1.54
USP3-211ENST00000559257 LYNX1P0DP58 116 aa5.45□□□□□ -1.54
USP3-211ENST00000559257 SPEGQ15772 3267 aa5.45□□□□□ -1.54
USP3-211ENST00000559257 MYO15AQ9UKN7 3530 aa5.44□□□□□ -1.54
USP3-211ENST00000559257 SPRR4Q96PI1 79 aa5.44□□□□□ -1.54
USP3-211ENST00000559257 IGLV1-50A0A075B6I6 118 aa5.44□□□□□ -1.54
USP3-211ENST00000559257 REG3GQ6UW15 175 aa5.43□□□□□ -1.54
USP3-211ENST00000559257 KRTAP29-1A8MX34 341 aaPredicted RBP5.42□□□□□ -1.54
USP3-211ENST00000559257 MIR22HGQ0VDD5 57 aa5.42□□□□□ -1.54
USP3-211ENST00000559257 Q8NBF4 154 aa5.42□□□□□ -1.54
USP3-211ENST00000559257 LINC00528Q8N1L1 170 aa5.42□□□□□ -1.54
USP3-211ENST00000559257 CFAP47Q6ZTR5 3102 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 NCOR1O75376 2440 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 WDFY4Q6ZS81 3184 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 IGLV5-37A0A075B6J1 123 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 C5orf56Q8N8D9 126 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 ZZEF1O43149 2961 aa5.41□□□□□ -1.54
USP3-211ENST00000559257 IGKV3OR2-268A0A0C4DH90 116 aa5.4□□□□□ -1.54
USP3-211ENST00000559257 HTN1P15515 57 aa5.4□□□□□ -1.54
USP3-211ENST00000559257 SPTBN1Q01082 2364 aaKnown RBP5.4□□□□□ -1.55
USP3-211ENST00000559257 OTOGLQ3ZCN5 2332 aa5.39□□□□□ -1.55
USP3-211ENST00000559257 GYPEP15421 78 aa5.39□□□□□ -1.55
USP3-211ENST00000559257 FRYQ5TBA9 3013 aa5.38□□□□□ -1.55
USP3-211ENST00000559257 DEFB131BA0A096LNP1 70 aa5.38□□□□□ -1.55
USP3-211ENST00000559257 HRES1P13985 223 aa5.38□□□□□ -1.55
USP3-211ENST00000559257 A0A0J9YWU9 116 aa5.37□□□□□ -1.55
USP3-211ENST00000559257 TNP2Q05952 138 aa5.37□□□□□ -1.55
USP3-211ENST00000559257 KRTAP25-1Q3LHN0 102 aa5.37□□□□□ -1.55
USP3-211ENST00000559257 WFDC13Q8IUB5 93 aa5.37□□□□□ -1.55
USP3-211ENST00000559257 PKDREJQ9NTG1 2253 aa5.37□□□□□ -1.55
USP3-211ENST00000559257 FRYLO94915 3013 aa5.36□□□□□ -1.55
USP3-211ENST00000559257 FREM2Q5SZK8 3169 aa5.36□□□□□ -1.55
USP3-211ENST00000559257 KRTAP16-1A8MUX0 517 aa5.36□□□□□ -1.55
USP3-211ENST00000559257 INSP01308 110 aa5.36□□□□□ -1.55
USP3-211ENST00000559257 ZNF861PO60384 105 aa5.35□□□□□ -1.55
USP3-211ENST00000559257 P0C880 135 aa5.35□□□□□ -1.55
USP3-211ENST00000559257 C1orf137Q5JT78 98 aa5.35□□□□□ -1.55
USP3-211ENST00000559257 Q8N377 158 aa5.35□□□□□ -1.55
USP3-211ENST00000559257 A0A1B0GUV1 79 aa5.35□□□□□ -1.55
USP3-211ENST00000559257 GVQW2A0A096LPI5 108 aaPredicted RBP5.33□□□□□ -1.56
USP3-211ENST00000559257 LOC100996750A0A140TA64 210 aa5.33□□□□□ -1.56
USP3-211ENST00000559257 WFDC10BQ8IUB3 73 aa5.33□□□□□ -1.56
USP3-211ENST00000559257 KRTAP4-6Q9BYQ5 205 aa5.33□□□□□ -1.56
USP3-211ENST00000559257 PRR34Q9NV39 138 aa5.33□□□□□ -1.56
USP3-211ENST00000559257 DMDP11532 3685 aa5.33□□□□□ -1.56
USP3-211ENST00000559257 TRGV1A0A0A0MS02 117 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 DEFB116Q30KQ4 102 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 ROS1P08922 2347 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 UQCR11O14957 56 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 C7orf33Q8WU49 177 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 CEP250Q9BV73 2442 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 CACNA1HO95180 2353 aa5.32□□□□□ -1.56
USP3-211ENST00000559257 A6NDX4 124 aa5.31□□□□□ -1.56
USP3-211ENST00000559257 INAFM1C9JVW0 142 aa5.3□□□□□ -1.56
USP3-211ENST00000559257 LINC00483Q53H64 154 aa5.3□□□□□ -1.56
USP3-211ENST00000559257 APC2O95996 2303 aa5.3□□□□□ -1.56
USP3-211ENST00000559257 ANKHD1Q8IWZ3 2542 aaKnown RBP5.3□□□□□ -1.56
USP3-211ENST00000559257 PCNX1Q96RV3 2341 aa5.29□□□□□ -1.56
USP3-211ENST00000559257 RP1L1Q8IWN7 2480 aaPredicted RBP5.29□□□□□ -1.56
USP3-211ENST00000559257 A0A087WSZ3 146 aa5.29□□□□□ -1.56
USP3-211ENST00000559257 A8MWP4 228 aa5.29□□□□□ -1.56
USP3-211ENST00000559257 TP53AIP1Q9HCN2 124 aa5.28□□□□□ -1.56
USP3-211ENST00000559257 ACACAQ13085 2346 aa5.28□□□□□ -1.56
USP3-211ENST00000559257 H3BUX3 64 aa5.28□□□□□ -1.56
USP3-211ENST00000559257 MSMBP08118 114 aa5.28□□□□□ -1.56
USP3-211ENST00000559257 CNOT1A5YKK6 2376 aaKnown RBP5.28□□□□□ -1.56
USP3-211ENST00000559257 SPTBN2O15020 2390 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 A0A1B0GU69 56 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 DEFB131AP59861 70 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 PCOTHQ58A44 107 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 DHRS4-AS1Q9P1J3 65 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 DCHS1Q96JQ0 3298 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 UNQ6190/PRO20217Q6UXQ8 127 aa5.27□□□□□ -1.57
USP3-211ENST00000559257 KALRNO60229 2985 aa5.26□□□□□ -1.57
USP3-211ENST00000559257 CDK2AP2O75956 126 aa5.26□□□□□ -1.57
USP3-211ENST00000559257 A0A1W2PPR1 153 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 TPRP12270 2363 aaKnown RBP5.25□□□□□ -1.57
USP3-211ENST00000559257 WNK1Q9H4A3 2382 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 BRD3OSQ6XYD6 125 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 DEFB105AQ8NG35 78 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 CCL19Q99731 98 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 CELSR3Q9NYQ7 3312 aa5.25□□□□□ -1.57
USP3-211ENST00000559257 EP300Q09472 2414 aaPredicted RBP5.25□□□□□ -1.57
USP3-211ENST00000559257 CYSRT1A8MQ03 144 aa5.24□□□□□ -1.57
USP3-211ENST00000559257 LY6EQ16553 131 aa5.24□□□□□ -1.57
USP3-211ENST00000559257 BDP1A6H8Y1 2624 aa5.24□□□□□ -1.57
USP3-211ENST00000559257 IGLV10-54A0A075B6I4 117 aa5.24□□□□□ -1.57
USP3-211ENST00000559257 IGKV2-24A0A0C4DH68 120 aa5.24□□□□□ -1.57
USP3-211ENST00000559257 IGLV5-52A0A0A0MRZ9 124 aa5.23□□□□□ -1.57
USP3-211ENST00000559257 SEC61BP60468 96 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms