RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 Q9HAA7 133 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 PRKDCP78527 4128 aaKnown RBP3.68□□□□□ -1.82
USP28-213ENST00000544967 IGHV3OR16-13A0A075B7E8 117 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 IGHV3-74A0A0B4J1X5 117 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 TRBV6-4A0A1B0GX49 114 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 K7EQD1 137 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 MIR7-3HGQ8N6C7 128 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 IGHV3-49A0A0A0MS15 119 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 TRBV7-4A0A0J9YYF1 115 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 G3V318 75 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 CSPG4Q6UVK1 2322 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 SETD2Q9BYW2 2564 aaPredicted RBP3.67□□□□□ -1.82
USP28-213ENST00000544967 COX6A2Q02221 97 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 C6orf223Q8N319 242 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 C11orf68Q9H3H3 251 aaKnown RBP3.67□□□□□ -1.82
USP28-213ENST00000544967 TLN2Q9Y4G6 2542 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 NACAE9PAV3 2078 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 LECT2O14960 151 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 DYNLRB2Q8TF09 96 aa3.67□□□□□ -1.82
USP28-213ENST00000544967 C9orf129Q5T035 196 aaKnown RBP3.66□□□□□ -1.82
USP28-213ENST00000544967 COX7B2Q8TF08 81 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 CDC42SE2Q9NRR3 84 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 TRAV23DV6A0A075B6W5 121 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 A0A087WZ39 114 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 C10orf99Q6UWK7 81 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 ENHOQ6UWT2 76 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 Q6ZQT0 140 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 Q8N814 137 aa3.66□□□□□ -1.82
USP28-213ENST00000544967 NCR3O14931 201 aa3.65□□□□□ -1.82
USP28-213ENST00000544967 CCL18P55774 89 aa3.65□□□□□ -1.82
USP28-213ENST00000544967 Q6ZVQ6 151 aa3.65□□□□□ -1.82
USP28-213ENST00000544967 TM2D3Q9BRN9 247 aa3.65□□□□□ -1.82
USP28-213ENST00000544967 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.65□□□□□ -1.83
USP28-213ENST00000544967 DEFB114Q30KQ6 69 aa3.65□□□□□ -1.83
USP28-213ENST00000544967 VWFP04275 2813 aa3.65□□□□□ -1.83
USP28-213ENST00000544967 F8WEM9 126 aa3.65□□□□□ -1.83
USP28-213ENST00000544967 MIFP14174 115 aa3.65□□□□□ -1.83
USP28-213ENST00000544967 RPL36AP83881 106 aaKnown RBP3.65□□□□□ -1.83
USP28-213ENST00000544967 RPL36ALQ969Q0 106 aaKnown RBP3.65□□□□□ -1.83
USP28-213ENST00000544967 HUWE1Q7Z6Z7 4374 aaKnown RBP3.65□□□□□ -1.83
USP28-213ENST00000544967 DNAH6Q9C0G6 4158 aa3.65□□□□□ -1.83
USP28-213ENST00000544967 SONP18583 2426 aaKnown RBP3.64□□□□□ -1.83
USP28-213ENST00000544967 FAM229AH3BQW9 127 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 LINC01547P58512 204 aaPredicted RBP3.64□□□□□ -1.83
USP28-213ENST00000544967 MEGF8Q7Z7M0 2845 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 COX17Q14061 63 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 C11orf72Q8NBR9 251 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 IGHV3-38A0A0C4DH36 116 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 LOC100131303A0A0U1RQF7 123 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 RBM3P98179 157 aaKnown RBP3.64□□□□□ -1.83
USP28-213ENST00000544967 Q1T7F1 81 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 ESRGQ1W209 222 aa3.64□□□□□ -1.83
USP28-213ENST00000544967 PKD1L1Q8TDX9 2849 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 IGLV1-51P01701 117 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 DEFB1P60022 68 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 C18orf65Q6ZTR6 163 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 FBN3Q75N90 2809 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 DAD1P61803 113 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 RNASE13Q5GAN3 156 aaKnown RBP3.63□□□□□ -1.83
USP28-213ENST00000544967 A0A1B0GW54 56 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 MAP6D1Q9H9H5 199 aa3.63□□□□□ -1.83
USP28-213ENST00000544967 LCE6AA0A183 80 aa3.62□□□□□ -1.83
USP28-213ENST00000544967 SPINK13Q1W4C9 94 aa3.62□□□□□ -1.83
USP28-213ENST00000544967 TMEM254Q8TBM7 123 aa3.62□□□□□ -1.83
USP28-213ENST00000544967 IGHV3OR16-9A0A0B4J2B5 98 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 NDUFS5O43920 106 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 Q6ZSN1 163 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 Q8IZM0 81 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 RMI2Q96E14 147 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 DNAH1Q9P2D7 4330 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 LINC00158P58513 81 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 NANOS2P60321 138 aaKnown RBP3.61□□□□□ -1.83
USP28-213ENST00000544967 NREPQ16612 68 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 LINC00575Q6W349 94 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 KTN1-AS1Q86SY8 53 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 DEFB104AQ8WTQ1 72 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 NTM-AS1Q6ZSK4 140 aa3.61□□□□□ -1.83
USP28-213ENST00000544967 H0Y9J4 135 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 Q6ZTC4 211 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 IGHV4-28A0A0C4DH34 117 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 A8MUN3 132 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 INSP01308 110 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 ATRQ13535 2644 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 TRAV10A0A0B4J240 114 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 KRTAP10-11P60412 298 aa3.6□□□□□ -1.83
USP28-213ENST00000544967 COL6A5A8TX70 2615 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 FUSP35637 526 aaKnown RBP eCLIP3.59□□□□□ -1.83
USP28-213ENST00000544967 Q8N3U1 123 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 OCR1Q9BZK8 76 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 ALMS1Q8TCU4 4167 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 STAB1Q9NY15 2570 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 M0R378 163 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 UBE2L6O14933 153 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 LYSTQ99698 3801 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 LINC00474Q9P2X8 69 aa3.59□□□□□ -1.83
USP28-213ENST00000544967 hDV103S1A0JD37 113 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 SLURP1P55000 103 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.58□□□□□ -1.84
USP28-213ENST00000544967 CYP4F30PQ9H0H9 118 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 LINC00313P59037 77 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms