RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DNAH11Q96DT5 4516 aa8□□□□□ -1.13
CLIP1-208ENST00000537004 Q1RN00 199 aa8□□□□□ -1.13
CLIP1-208ENST00000537004 Q8IZM0 81 aa8□□□□□ -1.13
CLIP1-208ENST00000537004 UPK3BQ9BT76 320 aa8□□□□□ -1.13
CLIP1-208ENST00000537004 SS18L2Q9UHA2 77 aa8□□□□□ -1.13
CLIP1-208ENST00000537004 IBA57-AS1B1ANH7 110 aa7.99□□□□□ -1.13
CLIP1-208ENST00000537004 WFDC10BQ8IUB3 73 aa7.99□□□□□ -1.13
CLIP1-208ENST00000537004 ANKRD29Q8N6D5 301 aa7.99□□□□□ -1.13
CLIP1-208ENST00000537004 SCGB1C2P0DMR2 95 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 MALP21145 153 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 LINC00158P58513 81 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 TNP2Q05952 138 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 Q6Q795 121 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 ENHOQ6UWT2 76 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 C6orf223Q8N319 242 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 MIR7-3HGQ8N6C7 128 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 PPDPFQ9H3Y8 114 aa7.98□□□□□ -1.13
CLIP1-208ENST00000537004 HERC2O95714 4834 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 RPL13AP40429 203 aaKnown RBP7.97□□□□□ -1.13
CLIP1-208ENST00000537004 GAGE2BQ13066 116 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 GAGE2EQ4V326 116 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 C2orf82Q6UX34 121 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 LINC01600Q96MT4 127 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 GAGE2DQ9UEU5 116 aa7.97□□□□□ -1.13
CLIP1-208ENST00000537004 TRBV30A0A0K0K1B3 111 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 B5MCH6 92 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 TRIAP1O43715 76 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 CRPP02741 224 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 PFN2P35080 140 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 KIAA0087Q14695 138 aa7.96□□□□□ -1.13
CLIP1-208ENST00000537004 SLC25A20O43772 301 aa7.96□□□□□ -1.14
CLIP1-208ENST00000537004 SNCGO76070 127 aa7.96□□□□□ -1.14
CLIP1-208ENST00000537004 NDUFV3P56181 108 aaKnown RBP7.96□□□□□ -1.14
CLIP1-208ENST00000537004 UBE2WQ96B02 151 aa7.96□□□□□ -1.14
CLIP1-208ENST00000537004 DYNC1H1Q14204 4646 aaKnown RBP7.96□□□□□ -1.14
CLIP1-208ENST00000537004 TRAV8-4A0A0B4J246 113 aa7.95□□□□□ -1.14
CLIP1-208ENST00000537004 CXCL5P42830 114 aa7.95□□□□□ -1.14
CLIP1-208ENST00000537004 TTC32Q5I0X7 151 aa7.94□□□□□ -1.14
CLIP1-208ENST00000537004 SND1-IT1Q9HBX3 110 aa7.93□□□□□ -1.14
CLIP1-208ENST00000537004 LRP1BQ9NZR2 4599 aa7.93□□□□□ -1.14
CLIP1-208ENST00000537004 C9JAW5 83 aa7.92□□□□□ -1.14
CLIP1-208ENST00000537004 COX6CP09669 75 aa7.92□□□□□ -1.14
CLIP1-208ENST00000537004 SPAG11BQ08648 103 aa7.92□□□□□ -1.14
CLIP1-208ENST00000537004 LINC01556Q5JQF7 62 aa7.91□□□□□ -1.14
CLIP1-208ENST00000537004 COX17Q14061 63 aa7.91□□□□□ -1.14
CLIP1-208ENST00000537004 ATXN8Q156A1 80 aa7.91□□□□□ -1.14
CLIP1-208ENST00000537004 IGKV2-28A0A075B6P5 120 aa7.9□□□□□ -1.14
CLIP1-208ENST00000537004 TRAV13-2A0A0B4J235 113 aa7.9□□□□□ -1.14
CLIP1-208ENST00000537004 IGKV2D-28P01615 120 aa7.9□□□□□ -1.14
CLIP1-208ENST00000537004 Q6ZRN7 208 aaPredicted RBP7.9□□□□□ -1.14
CLIP1-208ENST00000537004 LINC00337Q8N6G1 96 aa7.9□□□□□ -1.14
CLIP1-208ENST00000537004 C9orf116Q5BN46 136 aaPredicted RBP7.9□□□□□ -1.15
CLIP1-208ENST00000537004 LINC00526Q96FQ7 95 aa7.9□□□□□ -1.15
CLIP1-208ENST00000537004 DNAH5Q8TE73 4624 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 CCDC179H3BU77 68 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 DNAH10OSP0CZ25 163 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 LINC01620Q4KN68 170 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 KRTAP26-1Q6PEX3 210 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 NTN5Q8WTR8 489 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-208ENST00000537004 RYR1P21817 5038 aa7.89□□□□□ -1.15
CLIP1-208ENST00000537004 FUSP35637 526 aaKnown RBP eCLIP7.88□□□□□ -1.15
CLIP1-208ENST00000537004 KRTAP10-2P60368 255 aa7.88□□□□□ -1.15
CLIP1-208ENST00000537004 C10orf25Q5T742 122 aa7.88□□□□□ -1.15
CLIP1-208ENST00000537004 UNQ6190/PRO20217Q6UXQ8 127 aa7.88□□□□□ -1.15
CLIP1-208ENST00000537004 CLEC2BQ92478 149 aa7.88□□□□□ -1.15
CLIP1-208ENST00000537004 TRBV10-2A0A0K0K1G8 114 aa7.88□□□□□ -1.15
CLIP1-208ENST00000537004 C16orf90A8MZG2 172 aa7.86□□□□□ -1.15
CLIP1-208ENST00000537004 LST1O00453 97 aa7.86□□□□□ -1.15
CLIP1-208ENST00000537004 C1orf43Q9BWL3 253 aa7.86□□□□□ -1.15
CLIP1-208ENST00000537004 SMIM20Q8N5G0 67 aa7.86□□□□□ -1.15
CLIP1-208ENST00000537004 PCLOQ9Y6V0 5065 aa7.85□□□□□ -1.15
CLIP1-208ENST00000537004 FAM240AA0A1B0GVK7 77 aa7.85□□□□□ -1.15
CLIP1-208ENST00000537004 HSPG2P98160 4391 aa7.85□□□□□ -1.15
CLIP1-208ENST00000537004 IGKV2D-24A0A075B6R9 120 aa7.85□□□□□ -1.15
CLIP1-208ENST00000537004 RPL28P46779 137 aaKnown RBP7.85□□□□□ -1.15
CLIP1-208ENST00000537004 GVQW2A0A096LPI5 108 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-208ENST00000537004 TEX49A0A1B0GTD5 131 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 H3BT86 120 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 ZNF561-AS1K7EIQ3 104 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 HIGD2BQ4VC39 106 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 C15orf56Q8N910 161 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 TMEM126AQ9H061 195 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 Q9HAA7 133 aa7.84□□□□□ -1.15
CLIP1-208ENST00000537004 C6orf48Q9UBA6 75 aa7.83□□□□□ -1.16
CLIP1-208ENST00000537004 APOBP04114 4563 aaKnown RBP7.83□□□□□ -1.16
CLIP1-208ENST00000537004 NDUFC2O95298 119 aa7.83□□□□□ -1.16
CLIP1-208ENST00000537004 OR13C6PQ8NH95 151 aa7.83□□□□□ -1.16
CLIP1-208ENST00000537004 SMIM11BQ8TCY0 68 aa7.83□□□□□ -1.16
CLIP1-208ENST00000537004 PRR3P79522 188 aaKnown RBP7.82□□□□□ -1.16
CLIP1-208ENST00000537004 CAMK2N2Q96S95 79 aa7.82□□□□□ -1.16
CLIP1-208ENST00000537004 TRBV7-7A0A0K0K1E9 115 aa7.81□□□□□ -1.16
CLIP1-208ENST00000537004 A0A087WTM6 91 aa7.81□□□□□ -1.16
CLIP1-208ENST00000537004 KRTAP17-1Q9BYP8 105 aa7.81□□□□□ -1.16
CLIP1-208ENST00000537004 Q8NDZ9 215 aa7.8□□□□□ -1.16
CLIP1-208ENST00000537004 IMUPQ9GZP8 106 aa7.8□□□□□ -1.16
CLIP1-208ENST00000537004 ABCA13Q86UQ4 5058 aa7.8□□□□□ -1.16
CLIP1-208ENST00000537004 C2orf48Q96LS8 159 aa7.79□□□□□ -1.16
CLIP1-208ENST00000537004 FAM218AQ96MZ4 157 aa7.79□□□□□ -1.16
CLIP1-208ENST00000537004 NCR3O14931 201 aa7.78□□□□□ -1.16
CLIP1-208ENST00000537004 PSCAO43653 123 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms