RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SCIMPQ6UWF3 145 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 UBE2DNLQ8IWF7 75 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 TPT1P8Q9HAU6 139 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 SAR1AQ9NR31 198 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 ERG28Q9UKR5 140 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 SPEF2Q9C093 1822 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 SPINT3P49223 89 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 COPZ1P61923 177 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 KRTAP19-3Q7Z4W3 81 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 PFDN5Q99471 154 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 NDUFA12Q9UI09 145 aa0.59□□□□□ -2.31
CD44-234ENST00000531873 FOCADQ5VW36 1801 aa0.59□□□□□ -2.32
CD44-234ENST00000531873 VPS13DQ5THJ4 4388 aa0.59□□□□□ -2.32
CD44-234ENST00000531873 ALMS1Q8TCU4 4167 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 LRP1Q07954 4544 aaKnown RBP0.58□□□□□ -2.32
CD44-234ENST00000531873 FXYD1O00168 92 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 KLKP1Q107X0 134 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 DEFB112Q30KQ8 113 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 CCDC58Q4VC31 144 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 NCMAPQ5T1S8 102 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 Q6ZUT4 128 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 VSTM2AQ8TAG5 236 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 TSKUQ8WUA8 353 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 IFI27L1Q96BM0 104 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 VPS25Q9BRG1 176 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 PKHD1L1Q86WI1 4243 aa0.58□□□□□ -2.32
CD44-234ENST00000531873 DNAH5Q8TE73 4624 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 MUC5ACP98088 5654 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 TEX49A0A1B0GTD5 131 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 H3BSH0 61 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 CCDC179H3BU77 68 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 PYYP10082 97 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 SPRR2EP22531 72 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 SPRR2BP35325 72 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 SPRR2AP35326 72 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 ZNF137PP52743 207 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 NPC2P61916 151 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 RPL37P61927 97 aaKnown RBP0.57□□□□□ -2.32
CD44-234ENST00000531873 FAM107BQ9H098 131 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 C10orf95Q9H7T3 257 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 PAIP2BQ9ULR5 123 aaKnown RBP0.57□□□□□ -2.32
CD44-234ENST00000531873 DNAH7Q8WXX0 4024 aa0.57□□□□□ -2.32
CD44-234ENST00000531873 STARD9Q9P2P6 4700 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 PIRTP0C851 137 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 SPRR2DP22532 72 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 ELOF1P60002 83 aaKnown RBP0.56□□□□□ -2.32
CD44-234ENST00000531873 HAMPP81172 84 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 SPINK13Q1W4C9 94 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 KRTAP19-6Q3LI70 58 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 DPH3Q96FX2 82 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 DYNLRB1Q9NP97 96 aa0.56□□□□□ -2.32
CD44-234ENST00000531873 PKD1P98161 4303 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 PDCD11Q14690 1871 aaKnown RBP0.55□□□□□ -2.32
CD44-234ENST00000531873 APOC1P02654 83 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 MT1HL1P0DM35 61 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 EMX2Q04743 252 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 INSL4Q14641 139 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 TMEM14BQ9NUH8 114 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 APLNQ9ULZ1 77 aa0.55□□□□□ -2.32
CD44-234ENST00000531873 K7EP13 123 aa0.54□□□□□ -2.32
CD44-234ENST00000531873 GUCA1AP43080 201 aaPredicted RBP0.54□□□□□ -2.32
CD44-234ENST00000531873 RRAS2P62070 204 aaPredicted RBP0.54□□□□□ -2.32
CD44-234ENST00000531873 C9orf116Q5BN46 136 aaPredicted RBP0.54□□□□□ -2.32
CD44-234ENST00000531873 DEFB108BQ8NET1 73 aa0.54□□□□□ -2.32
CD44-234ENST00000531873 TMEM141Q96I45 108 aa0.54□□□□□ -2.32
CD44-234ENST00000531873 PSMG3Q9BT73 122 aaPredicted RBP0.54□□□□□ -2.32
CD44-234ENST00000531873 FAM103A1Q9BTL3 118 aaKnown RBP0.54□□□□□ -2.32
CD44-234ENST00000531873 TMEM191AQ9H0A3 160 aa0.54□□□□□ -2.32
CD44-234ENST00000531873 DNAH2Q9P225 4427 aa0.54□□□□□ -2.32
CD44-234ENST00000531873 DNAH6Q9C0G6 4158 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 KIF20BQ96Q89 1820 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 A0A087WTM6 91 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 TRAV12-3A0A0B4J271 114 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 TCRBV3S1A0A5B6 114 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 UBE2G1P62253 170 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 SELENOWP63302 87 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 SPANXN1Q5VSR9 72 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 TMEM242Q9NWH2 141 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 BET1LQ9NYM9 111 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 MUC16Q8WXI7 14507 aa0.53□□□□□ -2.32
CD44-234ENST00000531873 TRAV12-2A0A075B6T6 113 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 GNG7O60262 68 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 CCL3L1P16619 93 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 FXYD6P3P58550 94 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 DEFB110Q30KQ9 67 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 SLC48A1Q6P1K1 146 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 COX6B2Q6YFQ2 88 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 CYP2G1PQ6ZSU1 146 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 KCNRGQ8N5I3 272 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 LINC01600Q96MT4 127 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 LINC00470Q9BZP3 86 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 COA4Q9NYJ1 87 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 VPS13BQ7Z7G8 4022 aa0.52□□□□□ -2.33
CD44-234ENST00000531873 DNAH3Q8TD57 4116 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 IL5P05113 134 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 TNCP24821 2201 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 MT4P47944 62 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 MT1HP80294 61 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 SPATA8Q6RVD6 105 aa0.51□□□□□ -2.33
CD44-234ENST00000531873 C20orf197Q8N268 126 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms