RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ANKRD17O75179 2603 aaKnown RBP2.37□□□□□ -2.03
BRCA1-220ENST00000492859 COL4A2P08572 1712 aa2.37□□□□□ -2.03
BRCA1-220ENST00000492859 ABCA1O95477 2261 aa2.37□□□□□ -2.03
BRCA1-220ENST00000492859 CADP27708 2225 aa2.37□□□□□ -2.03
BRCA1-220ENST00000492859 KRTAP5-11Q6L8G4 156 aa2.36□□□□□ -2.03
BRCA1-220ENST00000492859 SHANK1Q9Y566 2161 aa2.36□□□□□ -2.03
BRCA1-220ENST00000492859 ACYP2P14621 99 aa2.36□□□□□ -2.03
BRCA1-220ENST00000492859 LINC00315P59091 139 aa2.36□□□□□ -2.03
BRCA1-220ENST00000492859 CNFNQ9BYD5 112 aa2.36□□□□□ -2.03
BRCA1-220ENST00000492859 SSC5DA1L4H1 1573 aa2.35□□□□□ -2.03
BRCA1-220ENST00000492859 CRIP1P50238 77 aa2.35□□□□□ -2.03
BRCA1-220ENST00000492859 C10orf55Q5SWW7 151 aa2.35□□□□□ -2.03
BRCA1-220ENST00000492859 LINC00308Q8TCZ7 52 aa2.35□□□□□ -2.03
BRCA1-220ENST00000492859 SMIM2Q9BVW6 85 aa2.35□□□□□ -2.03
BRCA1-220ENST00000492859 RTTNQ86VV8 2226 aa2.34□□□□□ -2.03
BRCA1-220ENST00000492859 TECTAO75443 2155 aa2.34□□□□□ -2.03
BRCA1-220ENST00000492859 KRTAP10-11P60412 298 aa2.34□□□□□ -2.03
BRCA1-220ENST00000492859 C14orf177Q52M58 125 aa2.34□□□□□ -2.03
BRCA1-220ENST00000492859 KRTAP7-1Q8IUC3 87 aa2.34□□□□□ -2.03
BRCA1-220ENST00000492859 IGKV2-30P06310 120 aa2.33□□□□□ -2.04
BRCA1-220ENST00000492859 DEFB134Q4QY38 66 aa2.33□□□□□ -2.04
BRCA1-220ENST00000492859 LINC01590Q5TEZ4 76 aa2.33□□□□□ -2.04
BRCA1-220ENST00000492859 SORL1Q92673 2214 aa2.33□□□□□ -2.04
BRCA1-220ENST00000492859 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
BRCA1-220ENST00000492859 URB1O60287 2271 aaKnown RBP2.32□□□□□ -2.04
BRCA1-220ENST00000492859 H3BRN7 92 aa2.32□□□□□ -2.04
BRCA1-220ENST00000492859 LINC00158P58513 81 aa2.32□□□□□ -2.04
BRCA1-220ENST00000492859 Q6ZQY7 126 aa2.32□□□□□ -2.04
BRCA1-220ENST00000492859 Q8N9L7 120 aa2.32□□□□□ -2.04
BRCA1-220ENST00000492859 NDUFA1O15239 70 aa2.31□□□□□ -2.04
BRCA1-220ENST00000492859 LCE1AQ5T7P2 110 aa2.31□□□□□ -2.04
BRCA1-220ENST00000492859 KRTAP11-1Q8IUC1 163 aa2.31□□□□□ -2.04
BRCA1-220ENST00000492859 CCL19Q99731 98 aa2.31□□□□□ -2.04
BRCA1-220ENST00000492859 M0R2N4 97 aa2.3□□□□□ -2.04
BRCA1-220ENST00000492859 GAS8-AS1O95177 125 aa2.3□□□□□ -2.04
BRCA1-220ENST00000492859 SMIM11BQ8TCY0 68 aa2.3□□□□□ -2.04
BRCA1-220ENST00000492859 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
BRCA1-220ENST00000492859 PDE4DIPQ5VU43 2346 aa2.3□□□□□ -2.04
BRCA1-220ENST00000492859 FN1P02751 2386 aaKnown RBP2.29□□□□□ -2.04
BRCA1-220ENST00000492859 COL4A4P53420 1690 aaPredicted RBP2.29□□□□□ -2.04
BRCA1-220ENST00000492859 DEFB131BA0A096LNP1 70 aa2.29□□□□□ -2.04
BRCA1-220ENST00000492859 G3V318 75 aa2.29□□□□□ -2.04
BRCA1-220ENST00000492859 INE1O15225 51 aa2.29□□□□□ -2.04
BRCA1-220ENST00000492859 SSBP3-AS1Q7Z2R9 100 aa2.29□□□□□ -2.04
BRCA1-220ENST00000492859 LOC730098B7Z3J9 87 aa2.28□□□□□ -2.04
BRCA1-220ENST00000492859 H3BSH0 61 aa2.28□□□□□ -2.04
BRCA1-220ENST00000492859 KRTAP10-9P60411 292 aa2.28□□□□□ -2.04
BRCA1-220ENST00000492859 PRB3Q04118 309 aaPredicted RBP2.28□□□□□ -2.04
BRCA1-220ENST00000492859 KNTC1P50748 2209 aa2.28□□□□□ -2.04
BRCA1-220ENST00000492859 KRTAP10-7P60409 375 aaPredicted RBP2.27□□□□□ -2.05
BRCA1-220ENST00000492859 KRTAP10-8P60410 259 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 MAPK1IP1LQ8NDC0 245 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 IGKV2-28A0A075B6P5 120 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 MRPL33O75394 65 aaKnown RBP2.27□□□□□ -2.05
BRCA1-220ENST00000492859 LY6G6CO95867 125 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 IGKV2D-28P01615 120 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 PRO3102Q9H379 93 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 CDKN2A-AS1Q9UH64 79 aa2.27□□□□□ -2.05
BRCA1-220ENST00000492859 PTPRQQ9UMZ3 2332 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 AHCTF1Q8WYP5 2266 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 ASXL3Q9C0F0 2248 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 IGKV2D-30A0A075B6S6 120 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 Q8IZM0 81 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 ANAPC11Q9NYG5 84 aa2.26□□□□□ -2.05
BRCA1-220ENST00000492859 KRTAP29-1A8MX34 341 aaPredicted RBP2.25□□□□□ -2.05
BRCA1-220ENST00000492859 IGKV2D-24A0A075B6R9 120 aa2.24□□□□□ -2.05
BRCA1-220ENST00000492859 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.24□□□□□ -2.05
BRCA1-220ENST00000492859 Q6ZRX8 168 aa2.24□□□□□ -2.05
BRCA1-220ENST00000492859 GPR179Q6PRD1 2367 aa2.24□□□□□ -2.05
BRCA1-220ENST00000492859 CNOT1A5YKK6 2376 aaKnown RBP2.23□□□□□ -2.05
BRCA1-220ENST00000492859 GVQW2A0A096LPI5 108 aaPredicted RBP2.23□□□□□ -2.05
BRCA1-220ENST00000492859 ANGP03950 147 aaKnown RBP2.23□□□□□ -2.05
BRCA1-220ENST00000492859 PLAC4Q8WY50 150 aa2.23□□□□□ -2.05
BRCA1-220ENST00000492859 A0A096LNT2 108 aa2.22□□□□□ -2.05
BRCA1-220ENST00000492859 SPTY2D1-AS1A0A0U1RR47 76 aa2.22□□□□□ -2.05
BRCA1-220ENST00000492859 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.22□□□□□ -2.052e-7■■■■■ 43.6
BRCA1-220ENST00000492859 CRIPTQ9P021 101 aa2.21□□□□□ -2.06
BRCA1-220ENST00000492859 DOPEY2Q9Y3R5 2298 aa2.21□□□□□ -2.06
BRCA1-220ENST00000492859 Q6ZRN7 208 aaPredicted RBP2.2□□□□□ -2.06
BRCA1-220ENST00000492859 POLR2KP53803 58 aaKnown RBP2.19□□□□□ -2.06
BRCA1-220ENST00000492859 LINC00575Q6W349 94 aa2.19□□□□□ -2.06
BRCA1-220ENST00000492859 RPS27P42677 84 aaKnown RBP2.19□□□□□ -2.06
BRCA1-220ENST00000492859 RPL39P62891 51 aaKnown RBP2.19□□□□□ -2.06
BRCA1-220ENST00000492859 SPINK9Q5DT21 86 aa2.18□□□□□ -2.06
BRCA1-220ENST00000492859 CACNA1EQ15878 2313 aa2.17□□□□□ -2.06
BRCA1-220ENST00000492859 DSCR10P59022 87 aa2.17□□□□□ -2.06
BRCA1-220ENST00000492859 RPL39LQ96EH5 51 aaKnown RBP2.17□□□□□ -2.06
BRCA1-220ENST00000492859 KNL1Q8NG31 2342 aa2.17□□□□□ -2.06
BRCA1-220ENST00000492859 IGFL1Q6UW32 110 aa2.16□□□□□ -2.06
BRCA1-220ENST00000492859 C10orf99Q6UWK7 81 aa2.16□□□□□ -2.06
BRCA1-220ENST00000492859 KRTAP2-2Q9BYT5 123 aa2.16□□□□□ -2.06
BRCA1-220ENST00000492859 KRTAP1-5Q9BYS1 174 aa2.15□□□□□ -2.06
BRCA1-220ENST00000492859 ASCC3Q8N3C0 2202 aaKnown RBP2.15□□□□□ -2.06
BRCA1-220ENST00000492859 TRIOBPQ9H2D6 2365 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 COL6A6A6NMZ7 2263 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 LYNX1G3V0Z9 82 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 I3L2K1 104 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 K7EQZ3 153 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 KRTAP13-2Q52LG2 175 aa2.15□□□□□ -2.07
BRCA1-220ENST00000492859 KRTAP12-2P59991 146 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms