RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 M0QXV9 152 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 DNAH5Q8TE73 4624 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 C3orf79P0CE67 100 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 KRTDAPP60985 99 aa6.72□□□□□ -1.33
UBR4-208ENST00000459947 NKAPP1Q8N9T2 125 aa6.71□□□□□ -1.33
UBR4-208ENST00000459947 LINC00158P58513 81 aa6.71□□□□□ -1.34
UBR4-208ENST00000459947 FAM19A5Q7Z5A7 132 aaPredicted RBP6.71□□□□□ -1.34
UBR4-208ENST00000459947 C14orf144Q96I85 54 aa6.71□□□□□ -1.34
UBR4-208ENST00000459947 A0A1W2PNN7 141 aa6.71□□□□□ -1.34
UBR4-208ENST00000459947 RYR1P21817 5038 aa6.7□□□□□ -1.34
UBR4-208ENST00000459947 HERC2O95714 4834 aa6.7□□□□□ -1.34
UBR4-208ENST00000459947 UBE2BP63146 152 aa6.7□□□□□ -1.34
UBR4-208ENST00000459947 PRR3P79522 188 aaKnown RBP6.7□□□□□ -1.34
UBR4-208ENST00000459947 C9orf129Q5T035 196 aaKnown RBP6.7□□□□□ -1.34
UBR4-208ENST00000459947 J3QR89 54 aa6.7□□□□□ -1.34
UBR4-208ENST00000459947 HIST3H2BBQ8N257 126 aa6.7□□□□□ -1.34
UBR4-208ENST00000459947 PFN2P35080 140 aa6.69□□□□□ -1.34
UBR4-208ENST00000459947 COL5A1-AS1Q5SY13 56 aa6.69□□□□□ -1.34
UBR4-208ENST00000459947 HNRNPA3P51991 378 aaKnown RBP6.69□□□□□ -1.34
UBR4-208ENST00000459947 COPS9Q8WXC6 57 aa6.69□□□□□ -1.34
UBR4-208ENST00000459947 OXTP01178 125 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 C5orf52A6NGY3 159 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 TIMM17BO60830 172 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 APOBP04114 4563 aaKnown RBP6.68□□□□□ -1.34
UBR4-208ENST00000459947 SPINK6Q6UWN8 80 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 SND1-IT1Q9HBX3 110 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 XAGE1AQ9HD64 81 aa6.68□□□□□ -1.34
UBR4-208ENST00000459947 MRPL55Q7Z7F7 128 aaKnown RBP6.67□□□□□ -1.34
UBR4-208ENST00000459947 C22orf24Q9Y442 160 aa6.67□□□□□ -1.34
UBR4-208ENST00000459947 PKHD1P08F94 4074 aa6.67□□□□□ -1.34
UBR4-208ENST00000459947 PHF5AQ7RTV0 110 aaKnown RBP6.67□□□□□ -1.34
UBR4-208ENST00000459947 REG3GQ6UW15 175 aa6.67□□□□□ -1.34
UBR4-208ENST00000459947 PMCHL2Q9BQD1 86 aa6.67□□□□□ -1.34
UBR4-208ENST00000459947 KRTAP10-4P60372 401 aaPredicted RBP6.66□□□□□ -1.34
UBR4-208ENST00000459947 HIST1H2BLQ99880 126 aa6.66□□□□□ -1.34
UBR4-208ENST00000459947 MIEN1Q9BRT3 115 aa6.66□□□□□ -1.34
UBR4-208ENST00000459947 LOC107984156A0A0G2JMH3 177 aa6.65□□□□□ -1.34
UBR4-208ENST00000459947 A0A0J9YXY3 114 aa6.65□□□□□ -1.34
UBR4-208ENST00000459947 SMIM13P0DJ93 91 aa6.65□□□□□ -1.34
UBR4-208ENST00000459947 ARL17AQ8IVW1 177 aa6.65□□□□□ -1.34
UBR4-208ENST00000459947 IGKV2D-26A0A0A0MRZ7 120 aa6.65□□□□□ -1.35
UBR4-208ENST00000459947 MTURNQ8N3F0 131 aa6.65□□□□□ -1.35
UBR4-208ENST00000459947 KIAA1109Q2LD37 5005 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 M0R378 163 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 FAM168BA1KXE4 195 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 C1orf137Q5JT78 98 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 MIR7-3HGQ8N6C7 128 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 DIRC1Q969H9 104 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 PSORS1C2Q9UIG4 136 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 VPREB1P12018 145 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 SERTAD4-AS1Q5TG53 156 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 PPDPFQ9H3Y8 114 aa6.64□□□□□ -1.35
UBR4-208ENST00000459947 TRBV10-2A0A0K0K1G8 114 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 KRTAP4-5Q9BYR2 181 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 KRTAP29-1A8MX34 341 aaPredicted RBP6.63□□□□□ -1.35
UBR4-208ENST00000459947 NDUFC2O95298 119 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 TSPEAR-AS2P59090 65 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 PYY3Q5JQD4 70 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 HSPG2P98160 4391 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 ZNF815PA8K554 130 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 IGLV7-43P04211 117 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 Q6ZVH6 145 aa6.63□□□□□ -1.35
UBR4-208ENST00000459947 RPL28P46779 137 aaKnown RBP6.62□□□□□ -1.35
UBR4-208ENST00000459947 LINC00167Q96N53 147 aa6.62□□□□□ -1.35
UBR4-208ENST00000459947 BCE1O60756 84 aa6.61□□□□□ -1.35
UBR4-208ENST00000459947 SPANXB1Q9NS25 103 aaPredicted RBP6.61□□□□□ -1.35
UBR4-208ENST00000459947 PRYO14603 147 aa6.61□□□□□ -1.35
UBR4-208ENST00000459947 IFITM1P13164 125 aa6.6□□□□□ -1.35
UBR4-208ENST00000459947 KRTAP7-1Q8IUC3 87 aa6.6□□□□□ -1.35
UBR4-208ENST00000459947 KRTAP17-1Q9BYP8 105 aa6.6□□□□□ -1.35
UBR4-208ENST00000459947 VAMP8Q9BV40 100 aa6.6□□□□□ -1.35
UBR4-208ENST00000459947 SRSF9Q13242 221 aaKnown RBP eCLIP6.6□□□□□ -1.35
UBR4-208ENST00000459947 J3QL48 77 aa6.59□□□□□ -1.35
UBR4-208ENST00000459947 SCGB1D4Q6XE38 83 aa6.59□□□□□ -1.35
UBR4-208ENST00000459947 A0A0U1RRA0 63 aa6.59□□□□□ -1.35
UBR4-208ENST00000459947 IGLV1-50A0A075B6I6 118 aa6.58□□□□□ -1.36
UBR4-208ENST00000459947 SPANXDQ9BXN6 97 aa6.58□□□□□ -1.36
UBR4-208ENST00000459947 SPANXCQ9NY87 97 aa6.58□□□□□ -1.36
UBR4-208ENST00000459947 ZNF861PO60384 105 aa6.58□□□□□ -1.36
UBR4-208ENST00000459947 UBE2AP49459 152 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 VPS13BQ7Z7G8 4022 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 PAM16Q9Y3D7 125 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 A4D1N5 150 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 H0Y9J4 135 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 SMIM20Q8N5G0 67 aa6.57□□□□□ -1.36
UBR4-208ENST00000459947 GAGE10A6NGK3 116 aa6.56□□□□□ -1.36
UBR4-208ENST00000459947 S100A7L2Q5SY68 101 aa6.55□□□□□ -1.36
UBR4-208ENST00000459947 SS18L2Q9UHA2 77 aa6.55□□□□□ -1.36
UBR4-208ENST00000459947 ATOH7Q8N100 152 aa6.55□□□□□ -1.36
UBR4-208ENST00000459947 LINC00308Q8TCZ7 52 aa6.55□□□□□ -1.36
UBR4-208ENST00000459947 HINT1P49773 126 aaPredicted RBP6.54□□□□□ -1.36
UBR4-208ENST00000459947 LINC00337Q8N6G1 96 aa6.54□□□□□ -1.36
UBR4-208ENST00000459947 RPL37AP8A6NKH3 93 aa6.54□□□□□ -1.36
UBR4-208ENST00000459947 SIGMAR1Q99720 223 aa6.54□□□□□ -1.36
UBR4-208ENST00000459947 TMEM126AQ9H061 195 aa6.54□□□□□ -1.36
UBR4-208ENST00000459947 KCNQ1DNQ9H478 68 aa6.54□□□□□ -1.36
UBR4-208ENST00000459947 ZNF706Q9Y5V0 76 aaPredicted RBP6.54□□□□□ -1.36
UBR4-208ENST00000459947 RPL13AP40429 203 aaKnown RBP6.54□□□□□ -1.36
UBR4-208ENST00000459947 LINC01600Q96MT4 127 aa6.53□□□□□ -1.36
UBR4-208ENST00000459947 NCR3O14931 201 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms