RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 MINOS1-NBL1R4GNA1 71 aa3.84□□□□□ -1.8
CLK1-202ENST00000409403 A0A087WYN8 130 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3-66A0A0C4DH42 116 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 H3BQ85 93 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 NDUFA4O00483 81 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 NDPQ00604 133 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 CD164Q04900 197 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 PMAIP1Q13794 54 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 CD164L2Q6UWJ8 174 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 CLEC19AQ6UXS0 136 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 Q8N6K4 173 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 LINC01560Q8TB33 94 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 FAM218AQ96MZ4 157 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 C11orf68Q9H3H3 251 aaKnown RBP3.83□□□□□ -1.8
CLK1-202ENST00000409403 Q9HAA7 133 aa3.83□□□□□ -1.8
CLK1-202ENST00000409403 ARFGEF3Q5TH69 2177 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 IGHV7-81A0A0B4J1V7 117 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3-16A0A0C4DH30 117 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 ODF3BA8MYP8 253 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 F6UB75 175 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 F8WEM9 126 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 TMEM256-PLSCR3K7ERE1 68 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 PDE6GP18545 87 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 NOTCH2NLQ7Z3S9 236 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 FAM19A3Q7Z5A8 133 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 RNASE6Q93091 150 aaKnown RBP3.82□□□□□ -1.8
CLK1-202ENST00000409403 LYSTQ99698 3801 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 HERC1Q15751 4861 aa3.82□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3OR16-8A0A075B7F1 116 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3-35A0A0C4DH35 117 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 A0A0U1RQV1 116 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 LCE6AA0A183 80 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 IBA57-AS1B1ANH7 110 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 CXCL6P80162 114 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 ENHOQ6UWT2 76 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 Q6ZRU5 148 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 ZNF625Q96I27 306 aaPredicted RBP3.81□□□□□ -1.8
CLK1-202ENST00000409403 CDKN2A-AS1Q9UH64 79 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 STAB2Q8WWQ8 2551 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 NACAE9PAV3 2078 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 IGHV1OR15-1A0A075B7D0 117 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 IGKV3-20P01619 116 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 IGF1P05019 195 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 MIFP14174 115 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 HILS1P60008 231 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 ECSCRQ19T08 205 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 LINC00167Q96N53 147 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 SIRPDQ9H106 197 aa3.81□□□□□ -1.8
CLK1-202ENST00000409403 CSMD3Q7Z407 3707 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 A0A087X002 238 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 NCR3O14931 201 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 LECT2O14960 151 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 SNRPD3P62318 126 aaKnown RBP3.8□□□□□ -1.8
CLK1-202ENST00000409403 ESRGQ1W209 222 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 SOSTDC1Q6X4U4 206 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 Q6ZRP5 223 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 Q6ZVQ6 151 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 STHQ8IWL8 128 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 MIR7-3HGQ8N6C7 128 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 SMIM11BQ8TCY0 68 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 SND1-IT1Q9HBX3 110 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 FRAS1Q86XX4 4008 aa3.8□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3OR16-13A0A075B7E8 117 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 A0A096LNT2 108 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3-49A0A0A0MS15 119 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 IGHV3-74A0A0B4J1X5 117 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 H3BUA1 57 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 FAM19A1Q7Z5A9 133 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 Q8N9W7 124 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 FAM104AQ969W3 186 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 CHCHD7Q9BUK0 85 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 MOB4Q9Y3A3 225 aa3.79□□□□□ -1.8
CLK1-202ENST00000409403 LOC110117498A0A087WWA1 95 aa3.78□□□□□ -1.8
CLK1-202ENST00000409403 LYRM9A8MSI8 78 aa3.78□□□□□ -1.8
CLK1-202ENST00000409403 BSPH1Q075Z2 132 aa3.78□□□□□ -1.8
CLK1-202ENST00000409403 DEFB104AQ8WTQ1 72 aa3.78□□□□□ -1.8
CLK1-202ENST00000409403 USMG5Q96IX5 58 aa3.78□□□□□ -1.8
CLK1-202ENST00000409403 TRBV7-4A0A0J9YYF1 115 aa3.78□□□□□ -1.81
CLK1-202ENST00000409403 A0A0U1RRA0 63 aa3.78□□□□□ -1.81
CLK1-202ENST00000409403 IGKV2-29A2NJV5 120 aaPredicted RBP3.78□□□□□ -1.81
CLK1-202ENST00000409403 RMI2Q96E14 147 aa3.78□□□□□ -1.81
CLK1-202ENST00000409403 KRTAP1-5Q9BYS1 174 aa3.78□□□□□ -1.81
CLK1-202ENST00000409403 K7EMT4 169 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 FUSP35637 526 aaKnown RBP eCLIP3.77□□□□□ -1.81
CLK1-202ENST00000409403 RNASE13Q5GAN3 156 aaKnown RBP3.77□□□□□ -1.81
CLK1-202ENST00000409403 LINC00242Q5T6M2 205 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 MRPL55Q7Z7F7 128 aaKnown RBP3.77□□□□□ -1.81
CLK1-202ENST00000409403 LINC00337Q8N6G1 96 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 LINC00467Q9BRT7 94 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 LINC00474Q9P2X8 69 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 FAM215AQ9Y5M1 114 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 SNURFQ9Y675 71 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 MUC4Q99102 2169 aa3.77□□□□□ -1.81
CLK1-202ENST00000409403 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.76□□□□□ -1.81
CLK1-202ENST00000409403 SAA4P35542 130 aa3.76□□□□□ -1.81
CLK1-202ENST00000409403 C9orf129Q5T035 196 aaKnown RBP3.76□□□□□ -1.81
CLK1-202ENST00000409403 TMEM254Q8TBM7 123 aa3.76□□□□□ -1.81
CLK1-202ENST00000409403 IGKV2-28A0A075B6P5 120 aa3.75□□□□□ -1.81
CLK1-202ENST00000409403 IGHV3OR16-12A0A075B7B8 117 aa3.75□□□□□ -1.81
CLK1-202ENST00000409403 IGHV4-30-2A0A087WSY4 118 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms