RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TIMM17BO60830 172 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 Q5VSD8 79 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 LINC00167Q96N53 147 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 BCE1O60756 84 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 MUC4Q99102 2169 aa6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 USP9YO00507 2555 aaPredicted RBP6.3□□□□□ -1.4
LIMCH1-202ENST00000381753 SETD2Q9BYW2 2564 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-202ENST00000381753 CRIP1P50238 77 aa6.29□□□□□ -1.4
LIMCH1-202ENST00000381753 A0A096LNT2 108 aa6.29□□□□□ -1.4
LIMCH1-202ENST00000381753 Q6ZSA8 131 aa6.29□□□□□ -1.4
LIMCH1-202ENST00000381753 BAHCC1Q9P281 2608 aa6.29□□□□□ -1.4
LIMCH1-202ENST00000381753 HELZ2Q9BYK8 2649 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-202ENST00000381753 KRTAP21-3Q3LHN1 58 aa6.28□□□□□ -1.4
LIMCH1-202ENST00000381753 MGAM2Q2M2H8 2515 aa6.28□□□□□ -1.4
LIMCH1-202ENST00000381753 TRBV7-6A0A0J9YX20 115 aa6.28□□□□□ -1.4
LIMCH1-202ENST00000381753 COA6Q5JTJ3 125 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-202ENST00000381753 UQCRQO14949 82 aa6.27□□□□□ -1.41
LIMCH1-202ENST00000381753 CCDC179H3BU77 68 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 LINC00313P59037 77 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 PRR3P79522 188 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 TRIAP1O43715 76 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 SMIM11BQ8TCY0 68 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 EP400Q96L91 3159 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 IGLV7-46A0A075B6I9 117 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 IGLV5-37A0A075B6J1 123 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 LINC00575Q6W349 94 aa6.26□□□□□ -1.41
LIMCH1-202ENST00000381753 C7orf65Q6ZTY9 151 aa6.25□□□□□ -1.41
LIMCH1-202ENST00000381753 DEFB116Q30KQ4 102 aa6.25□□□□□ -1.41
LIMCH1-202ENST00000381753 PSORS1C2Q9UIG4 136 aa6.25□□□□□ -1.41
LIMCH1-202ENST00000381753 POLR2KP53803 58 aaKnown RBP6.24□□□□□ -1.41
LIMCH1-202ENST00000381753 LINC01561Q8N1V8 128 aa6.24□□□□□ -1.41
LIMCH1-202ENST00000381753 C11orf72Q8NBR9 251 aa6.24□□□□□ -1.41
LIMCH1-202ENST00000381753 TP73-AS1Q9UF72 201 aa6.24□□□□□ -1.41
LIMCH1-202ENST00000381753 SNURFQ9Y675 71 aa6.24□□□□□ -1.41
LIMCH1-202ENST00000381753 CRIP3Q6Q6R5 217 aa6.23□□□□□ -1.41
LIMCH1-202ENST00000381753 LINC00208Q96KT6 92 aa6.23□□□□□ -1.41
LIMCH1-202ENST00000381753 C9orf163Q8N9P6 203 aa6.23□□□□□ -1.41
LIMCH1-202ENST00000381753 CSDC2Q9Y534 153 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-202ENST00000381753 AGRNO00468 2067 aa6.23□□□□□ -1.41
LIMCH1-202ENST00000381753 SMIM1B2RUZ4 78 aa6.22□□□□□ -1.41
LIMCH1-202ENST00000381753 KIAA0087Q14695 138 aa6.21□□□□□ -1.41
LIMCH1-202ENST00000381753 NTM-AS1Q6ZSK4 140 aa6.21□□□□□ -1.42
LIMCH1-202ENST00000381753 Q8N3U1 123 aa6.21□□□□□ -1.42
LIMCH1-202ENST00000381753 SETXQ7Z333 2677 aaKnown RBP6.21□□□□□ -1.42
LIMCH1-202ENST00000381753 LINC01547P58512 204 aaPredicted RBP6.21□□□□□ -1.42
LIMCH1-202ENST00000381753 PLXNB1O43157 2135 aa6.2□□□□□ -1.42
LIMCH1-202ENST00000381753 GVQW2A0A096LPI5 108 aaPredicted RBP6.2□□□□□ -1.42
LIMCH1-202ENST00000381753 ZNF861PO60384 105 aa6.2□□□□□ -1.42
LIMCH1-202ENST00000381753 C6orf48Q9UBA6 75 aa6.2□□□□□ -1.42
LIMCH1-202ENST00000381753 HCG22E2RYF7 251 aa6.19□□□□□ -1.42
LIMCH1-202ENST00000381753 PCOTHQ58A44 107 aa6.19□□□□□ -1.42
LIMCH1-202ENST00000381753 IGLV7-43P04211 117 aa6.19□□□□□ -1.42
LIMCH1-202ENST00000381753 MRPS12O15235 138 aaKnown RBP6.17□□□□□ -1.42
LIMCH1-202ENST00000381753 H0Y9P7 68 aa6.16□□□□□ -1.42
LIMCH1-202ENST00000381753 MAST4O15021 2626 aa6.16□□□□□ -1.42
LIMCH1-202ENST00000381753 IGLV1-50A0A075B6I6 118 aa6.15□□□□□ -1.42
LIMCH1-202ENST00000381753 OXTP01178 125 aa6.15□□□□□ -1.42
LIMCH1-202ENST00000381753 SEC61BP60468 96 aaKnown RBP6.14□□□□□ -1.43
LIMCH1-202ENST00000381753 OBSCN-AS1Q96MR7 158 aa6.14□□□□□ -1.43
LIMCH1-202ENST00000381753 COL27A1Q8IZC6 1860 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-202ENST00000381753 SSBP3-AS1Q7Z2R9 100 aa6.13□□□□□ -1.43
LIMCH1-202ENST00000381753 ST20-AS1Q8NBB2 130 aa6.13□□□□□ -1.43
LIMCH1-202ENST00000381753 A8MTW9 85 aa6.12□□□□□ -1.43
LIMCH1-202ENST00000381753 FAM168BA1KXE4 195 aa6.12□□□□□ -1.43
LIMCH1-202ENST00000381753 IGLV6-57P01721 117 aa6.12□□□□□ -1.43
LIMCH1-202ENST00000381753 TRAV7A0A075B6U4 112 aa6.12□□□□□ -1.43
LIMCH1-202ENST00000381753 PRR26Q8N8Z3 221 aa6.12□□□□□ -1.43
LIMCH1-202ENST00000381753 ACYP2P14621 99 aa6.11□□□□□ -1.43
LIMCH1-202ENST00000381753 PMAIP1Q13794 54 aa6.11□□□□□ -1.43
LIMCH1-202ENST00000381753 TRBV7-7A0A0K0K1E9 115 aa6.11□□□□□ -1.43
LIMCH1-202ENST00000381753 SERTAD4-AS1Q5TG53 156 aa6.1□□□□□ -1.43
LIMCH1-202ENST00000381753 USP24Q9UPU5 2620 aa6.1□□□□□ -1.43
LIMCH1-202ENST00000381753 COX7CP15954 63 aa6.09□□□□□ -1.43
LIMCH1-202ENST00000381753 IGIPA6NJ69 53 aa6.09□□□□□ -1.44
LIMCH1-202ENST00000381753 GAS8-AS1O95177 125 aa6.09□□□□□ -1.44
LIMCH1-202ENST00000381753 CSNK1G2-AS1Q8NCQ2 148 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 ATRQ13535 2644 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 SOSTDC1Q6X4U4 206 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 SMIM26A0A096LP01 95 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 IGHV3OR16-9A0A0B4J2B5 98 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 Q6ZRX8 168 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 ANAPC11Q9NYG5 84 aa6.08□□□□□ -1.44
LIMCH1-202ENST00000381753 HCFC1P51610 2035 aa6.07□□□□□ -1.44
LIMCH1-202ENST00000381753 C8orf87E5RJ46 101 aa6.07□□□□□ -1.44
LIMCH1-202ENST00000381753 TP53AIP1Q9HCN2 124 aa6.07□□□□□ -1.44
LIMCH1-202ENST00000381753 WDR87Q6ZQQ6 2873 aa6.07□□□□□ -1.44
LIMCH1-202ENST00000381753 C1orf64Q8NEQ6 169 aa6.07□□□□□ -1.44
LIMCH1-202ENST00000381753 AMELXQ99217 191 aa6.06□□□□□ -1.44
LIMCH1-202ENST00000381753 A0A1B0GU69 56 aa6.06□□□□□ -1.44
LIMCH1-202ENST00000381753 LINC01554Q52M75 96 aa6.06□□□□□ -1.44
LIMCH1-202ENST00000381753 CNFNQ9BYD5 112 aa6.06□□□□□ -1.44
LIMCH1-202ENST00000381753 LINC00612Q8N6U2 182 aa6.06□□□□□ -1.44
LIMCH1-202ENST00000381753 DSCR10P59022 87 aa6.04□□□□□ -1.44
LIMCH1-202ENST00000381753 YPEL4Q96NS1 127 aa6.03□□□□□ -1.44
LIMCH1-202ENST00000381753 PRO0628Q9UI54 55 aa6.03□□□□□ -1.44
LIMCH1-202ENST00000381753 LINC00846Q9NV44 126 aa6.02□□□□□ -1.45
LIMCH1-202ENST00000381753 C15orf56Q8N910 161 aa6.01□□□□□ -1.45
LIMCH1-202ENST00000381753 C4orf26Q17RF5 130 aa6.01□□□□□ -1.45
LIMCH1-202ENST00000381753 CNBPP62633 177 aaKnown RBP6□□□□□ -1.45
LIMCH1-202ENST00000381753 PSPHP1O15172 72 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms