RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 HINT1P49773 126 aaPredicted RBP13.09□□□□□ -0.31
SMARCB1-202ENST00000344921 SLC25A34Q6PIV7 304 aa13.09□□□□□ -0.31
SMARCB1-202ENST00000344921 FAM168BA1KXE4 195 aa13.08□□□□□ -0.32
SMARCB1-202ENST00000344921 RPL37AP61513 92 aaKnown RBP13.08□□□□□ -0.32
SMARCB1-202ENST00000344921 C9orf129Q5T035 196 aaKnown RBP13.08□□□□□ -0.32
SMARCB1-202ENST00000344921 FAM19A5Q7Z5A7 132 aaPredicted RBP13.08□□□□□ -0.32
SMARCB1-202ENST00000344921 ERG28Q9UKR5 140 aa13.08□□□□□ -0.32
SMARCB1-202ENST00000344921 LEPROTO15243 131 aa13.07□□□□□ -0.32
SMARCB1-202ENST00000344921 PLEKHB2Q96CS7 222 aa13.07□□□□□ -0.32
SMARCB1-202ENST00000344921 NDUFA12Q9UI09 145 aa13.05□□□□□ -0.32
SMARCB1-202ENST00000344921 COX17Q14061 63 aa13.05□□□□□ -0.32
SMARCB1-202ENST00000344921 J3QQQ9 107 aa13.04□□□□□ -0.32
SMARCB1-202ENST00000344921 MYMXA0A1B0GTQ4 84 aa13.03□□□□□ -0.32
SMARCB1-202ENST00000344921 LGALS3P17931 250 aaKnown RBP13.03□□□□□ -0.32
SMARCB1-202ENST00000344921 PHF5AQ7RTV0 110 aaKnown RBP13.03□□□□□ -0.32
SMARCB1-202ENST00000344921 LINC00158P58513 81 aa13.02□□□□□ -0.32
SMARCB1-202ENST00000344921 TSPEAR-AS2P59090 65 aa13.02□□□□□ -0.32
SMARCB1-202ENST00000344921 HERV-K104P63124 156 aa13.02□□□□□ -0.32
SMARCB1-202ENST00000344921 MEIG1Q5JSS6 88 aa13.02□□□□□ -0.32
SMARCB1-202ENST00000344921 A0A0U1RRA0 63 aa13.02□□□□□ -0.33
SMARCB1-202ENST00000344921 BVES-AS1Q5T3Y7 98 aa13.02□□□□□ -0.33
SMARCB1-202ENST00000344921 E9PLD3 99 aa13□□□□□ -0.33
SMARCB1-202ENST00000344921 M0QXV9 152 aa13□□□□□ -0.33
SMARCB1-202ENST00000344921 INAFM2P0DMQ5 153 aa13□□□□□ -0.33
SMARCB1-202ENST00000344921 SRRM2Q9UQ35 2752 aaKnown RBP13□□□□□ -0.33
SMARCB1-202ENST00000344921 COX8AP10176 69 aa12.99□□□□□ -0.33
SMARCB1-202ENST00000344921 VPS13BQ7Z7G8 4022 aa12.99□□□□□ -0.33
SMARCB1-202ENST00000344921 SERTAD4-AS1Q5TG53 156 aa12.99□□□□□ -0.33
SMARCB1-202ENST00000344921 KRTAP7-1Q8IUC3 87 aa12.99□□□□□ -0.33
SMARCB1-202ENST00000344921 SMIM13P0DJ93 91 aa12.98□□□□□ -0.33
SMARCB1-202ENST00000344921 NMUP48645 174 aa12.98□□□□□ -0.33
SMARCB1-202ENST00000344921 SND1-IT1Q9HBX3 110 aa12.98□□□□□ -0.33
SMARCB1-202ENST00000344921 TAX1BP3O14907 124 aa12.97□□□□□ -0.33
SMARCB1-202ENST00000344921 KRTAP10-4P60372 401 aaPredicted RBP12.96□□□□□ -0.33
SMARCB1-202ENST00000344921 VAMP3Q15836 100 aa12.96□□□□□ -0.33
SMARCB1-202ENST00000344921 ABCA13Q86UQ4 5058 aa12.96□□□□□ -0.33
SMARCB1-202ENST00000344921 UBE2BP63146 152 aa12.96□□□□□ -0.34
SMARCB1-202ENST00000344921 C22orf24Q9Y442 160 aa12.96□□□□□ -0.34
SMARCB1-202ENST00000344921 PRR3P79522 188 aaKnown RBP12.93□□□□□ -0.34
SMARCB1-202ENST00000344921 NKAPP1Q8N9T2 125 aa12.93□□□□□ -0.34
SMARCB1-202ENST00000344921 PLA2G2DQ9UNK4 145 aa12.93□□□□□ -0.34
SMARCB1-202ENST00000344921 MIR7-3HGQ8N6C7 128 aa12.92□□□□□ -0.34
SMARCB1-202ENST00000344921 PCP4P48539 62 aa12.91□□□□□ -0.34
SMARCB1-202ENST00000344921 MRPL55Q7Z7F7 128 aaKnown RBP12.91□□□□□ -0.34
SMARCB1-202ENST00000344921 PSORS1C2Q9UIG4 136 aa12.91□□□□□ -0.34
SMARCB1-202ENST00000344921 IGKV2D-26A0A0A0MRZ7 120 aa12.91□□□□□ -0.34
SMARCB1-202ENST00000344921 C2orf91Q6ZV80 131 aa12.91□□□□□ -0.34
SMARCB1-202ENST00000344921 RPL24P83731 157 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-202ENST00000344921 TP73-AS1Q9UF72 201 aa12.9□□□□□ -0.34
SMARCB1-202ENST00000344921 PCLOQ9Y6V0 5065 aa12.89□□□□□ -0.35
SMARCB1-202ENST00000344921 C1orf137Q5JT78 98 aa12.89□□□□□ -0.35
SMARCB1-202ENST00000344921 Q6ZVH6 145 aa12.89□□□□□ -0.35
SMARCB1-202ENST00000344921 BOD1L2Q8IYS8 172 aa12.89□□□□□ -0.35
SMARCB1-202ENST00000344921 A6NDN8 102 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 A0A0J9YXY3 114 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 GAGE10A6NGK3 116 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 ZNF815PA8K554 130 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 ANKRD39Q53RE8 183 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 DAND5Q8N907 189 aa12.88□□□□□ -0.35
SMARCB1-202ENST00000344921 HSD52Q0P140 79 aa12.87□□□□□ -0.35
SMARCB1-202ENST00000344921 KRTAP11-1Q8IUC1 163 aa12.87□□□□□ -0.35
SMARCB1-202ENST00000344921 IGLV5-37A0A075B6J1 123 aa12.86□□□□□ -0.35
SMARCB1-202ENST00000344921 LINC00167Q96N53 147 aa12.86□□□□□ -0.35
SMARCB1-202ENST00000344921 TTTY13Q9BZ97 58 aa12.86□□□□□ -0.35
SMARCB1-202ENST00000344921 RPL37AP8A6NKH3 93 aa12.85□□□□□ -0.35
SMARCB1-202ENST00000344921 VPREB1P12018 145 aa12.85□□□□□ -0.35
SMARCB1-202ENST00000344921 GTF2H5Q6ZYL4 71 aa12.85□□□□□ -0.35
SMARCB1-202ENST00000344921 OCIAD2Q56VL3 154 aa12.83□□□□□ -0.36
SMARCB1-202ENST00000344921 C9orf118A6NHY6 69 aa12.82□□□□□ -0.36
SMARCB1-202ENST00000344921 K7ERU9 68 aa12.82□□□□□ -0.36
SMARCB1-202ENST00000344921 Q8NDZ9 215 aa12.82□□□□□ -0.36
SMARCB1-202ENST00000344921 FLG2Q5D862 2391 aaPredicted RBP12.81□□□□□ -0.36
SMARCB1-202ENST00000344921 SCGB1D4Q6XE38 83 aa12.81□□□□□ -0.36
SMARCB1-202ENST00000344921 HIGD1BQ9P298 99 aa12.81□□□□□ -0.36
SMARCB1-202ENST00000344921 IGKV2-28A0A075B6P5 120 aa12.8□□□□□ -0.36
SMARCB1-202ENST00000344921 IGKV2D-28P01615 120 aa12.8□□□□□ -0.36
SMARCB1-202ENST00000344921 NPC2P61916 151 aa12.8□□□□□ -0.36
SMARCB1-202ENST00000344921 ADAMTSL4-AS1Q5T5F5 129 aa12.8□□□□□ -0.36
SMARCB1-202ENST00000344921 IGLV7-43P04211 117 aa12.78□□□□□ -0.36
SMARCB1-202ENST00000344921 PCP2Q8IVA1 136 aa12.78□□□□□ -0.36
SMARCB1-202ENST00000344921 NCR3O14931 201 aa12.77□□□□□ -0.36
SMARCB1-202ENST00000344921 TIMM17BO60830 172 aa12.77□□□□□ -0.36
SMARCB1-202ENST00000344921 SPINK6Q6UWN8 80 aa12.77□□□□□ -0.36
SMARCB1-202ENST00000344921 M0R378 163 aa12.76□□□□□ -0.37
SMARCB1-202ENST00000344921 LOC107984156A0A0G2JMH3 177 aa12.76□□□□□ -0.37
SMARCB1-202ENST00000344921 ARL17AQ8IVW1 177 aa12.76□□□□□ -0.37
SMARCB1-202ENST00000344921 IGLV1-50A0A075B6I6 118 aa12.75□□□□□ -0.37
SMARCB1-202ENST00000344921 K7EP34 96 aa12.75□□□□□ -0.37
SMARCB1-202ENST00000344921 SRSF9Q13242 221 aaKnown RBP eCLIP12.75□□□□□ -0.37
SMARCB1-202ENST00000344921 LITAFQ99732 161 aa12.75□□□□□ -0.37
SMARCB1-202ENST00000344921 MYCBP2O75592 4640 aa12.74□□□□□ -0.37
SMARCB1-202ENST00000344921 TMEM238C9JI98 176 aa12.73□□□□□ -0.37
SMARCB1-202ENST00000344921 VPS25Q9BRG1 176 aa12.73□□□□□ -0.37
SMARCB1-202ENST00000344921 SOSTDC1Q6X4U4 206 aa12.72□□□□□ -0.37
SMARCB1-202ENST00000344921 PKHD1L1Q86WI1 4243 aa12.72□□□□□ -0.37
SMARCB1-202ENST00000344921 BCE1O60756 84 aa12.71□□□□□ -0.37
SMARCB1-202ENST00000344921 C21orf62-AS1Q17RA5 79 aa12.71□□□□□ -0.37
SMARCB1-202ENST00000344921 LINC00308Q8TCZ7 52 aa12.71□□□□□ -0.37
SMARCB1-202ENST00000344921 EIF4EBP3O60516 100 aaPredicted RBP12.71□□□□□ -0.38
SMARCB1-202ENST00000344921 TAL2Q16559 108 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms