RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 LOC110117498A0A087WWA1 95 aa8.83□□□□□ -1
USP40-201ENST00000251722 SMIM29Q86T20 159 aa8.82□□□□□ -1
USP40-201ENST00000251722 CCDC168Q8NDH2 2452 aa8.82□□□□□ -1
USP40-201ENST00000251722 C1orf64Q8NEQ6 169 aa8.82□□□□□ -1
USP40-201ENST00000251722 SPATA3Q8NHX4 192 aa8.82□□□□□ -1
USP40-201ENST00000251722 SORL1Q92673 2214 aa8.81□□□□□ -1
USP40-201ENST00000251722 ARHGAP32A7KAX9 2087 aa8.81□□□□□ -1
USP40-201ENST00000251722 IGHV3OR16-9A0A0B4J2B5 98 aa8.81□□□□□ -1
USP40-201ENST00000251722 IGLV5-45A0A087WSX0 123 aa8.81□□□□□ -1
USP40-201ENST00000251722 LINC00337Q8N6G1 96 aa8.81□□□□□ -1
USP40-201ENST00000251722 Q8NAQ8 132 aa8.79□□□□□ -1
USP40-201ENST00000251722 IGHV6-1A0A0B4J1U7 121 aa8.79□□□□□ -1
USP40-201ENST00000251722 Q6ZRP5 223 aa8.79□□□□□ -1
USP40-201ENST00000251722 Q1T7F1 81 aa8.79□□□□□ -1
USP40-201ENST00000251722 SPINT4Q6UDR6 99 aa8.79□□□□□ -1
USP40-201ENST00000251722 PLA2G1BP04054 148 aaKnown RBP8.78□□□□□ -1
USP40-201ENST00000251722 PCOTHQ58A44 107 aa8.78□□□□□ -1
USP40-201ENST00000251722 CDC42SE1Q9NRR8 79 aa8.78□□□□□ -1
USP40-201ENST00000251722 LINC00315P59091 139 aa8.77□□□□□ -1
USP40-201ENST00000251722 Q6ZQT0 140 aa8.77□□□□□ -1.01
USP40-201ENST00000251722 PLXNB1O43157 2135 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 GVQW2A0A096LPI5 108 aaPredicted RBP8.76□□□□□ -1.01
USP40-201ENST00000251722 C16orf90A8MZG2 172 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 LINC01600Q96MT4 127 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 A0A087WSZ3 146 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 RTL8CO15255 209 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 DNAH10OSP0CZ25 163 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 AGRNO00468 2067 aa8.76□□□□□ -1.01
USP40-201ENST00000251722 TP53AIP1Q9HCN2 124 aa8.75□□□□□ -1.01
USP40-201ENST00000251722 LINC01554Q52M75 96 aa8.74□□□□□ -1.01
USP40-201ENST00000251722 PTPRBP23467 1997 aa8.74□□□□□ -1.01
USP40-201ENST00000251722 Q8NBF4 154 aa8.74□□□□□ -1.01
USP40-201ENST00000251722 A8MTW9 85 aa8.73□□□□□ -1.01
USP40-201ENST00000251722 FAM218AQ96MZ4 157 aa8.73□□□□□ -1.01
USP40-201ENST00000251722 TLN1Q9Y490 2541 aaKnown RBP8.73□□□□□ -1.01
USP40-201ENST00000251722 ACYP2P14621 99 aa8.73□□□□□ -1.01
USP40-201ENST00000251722 PRR3P79522 188 aaKnown RBP8.72□□□□□ -1.01
USP40-201ENST00000251722 LINC00167Q96N53 147 aa8.72□□□□□ -1.01
USP40-201ENST00000251722 C6orf48Q9UBA6 75 aa8.72□□□□□ -1.01
USP40-201ENST00000251722 PRLHP81277 87 aa8.71□□□□□ -1.02
USP40-201ENST00000251722 LINC00588Q9Y4M8 146 aa8.71□□□□□ -1.02
USP40-201ENST00000251722 C19orf73Q9NVV2 129 aa8.7□□□□□ -1.02
USP40-201ENST00000251722 COL27A1Q8IZC6 1860 aaPredicted RBP8.68□□□□□ -1.02
USP40-201ENST00000251722 A0A096LNT2 108 aa8.68□□□□□ -1.02
USP40-201ENST00000251722 COA5Q86WW8 74 aa8.67□□□□□ -1.02
USP40-201ENST00000251722 Q6ZRX8 168 aa8.66□□□□□ -1.02
USP40-201ENST00000251722 UQCR11O14957 56 aa8.66□□□□□ -1.02
USP40-201ENST00000251722 KIAA0087Q14695 138 aa8.65□□□□□ -1.03
USP40-201ENST00000251722 MYO18BQ8IUG5 2567 aa8.64□□□□□ -1.03
USP40-201ENST00000251722 PCSK5Q92824 1860 aa8.64□□□□□ -1.03
USP40-201ENST00000251722 TYMSOSQ8TAI1 123 aa8.64□□□□□ -1.03
USP40-201ENST00000251722 MOBPQ13875 183 aa8.63□□□□□ -1.03
USP40-201ENST00000251722 PIEZO2Q9H5I5 2752 aa8.62□□□□□ -1.03
USP40-201ENST00000251722 RPL37AP61513 92 aaKnown RBP8.61□□□□□ -1.03
USP40-201ENST00000251722 CSNK1G2-AS1Q8NCQ2 148 aa8.61□□□□□ -1.03
USP40-201ENST00000251722 ABCA2Q9BZC7 2435 aa8.61□□□□□ -1.03
USP40-201ENST00000251722 K7EIL1 84 aa8.61□□□□□ -1.03
USP40-201ENST00000251722 FP248Q71RG6 208 aaPredicted RBP8.61□□□□□ -1.03
USP40-201ENST00000251722 LITAFQ99732 161 aa8.6□□□□□ -1.03
USP40-201ENST00000251722 EPM2AB3EWF7 344 aa8.59□□□□□ -1.03
USP40-201ENST00000251722 SPANXA2-OT1Q8N9U9 137 aa8.59□□□□□ -1.03
USP40-201ENST00000251722 LINC00612Q8N6U2 182 aa8.58□□□□□ -1.04
USP40-201ENST00000251722 SPACA4Q8TDM5 124 aa8.58□□□□□ -1.04
USP40-201ENST00000251722 LRRK2Q5S007 2527 aa8.58□□□□□ -1.04
USP40-201ENST00000251722 MIR22HGQ0VDD5 57 aa8.58□□□□□ -1.04
USP40-201ENST00000251722 PHF5AQ7RTV0 110 aaKnown RBP8.58□□□□□ -1.04
USP40-201ENST00000251722 MYO9AB2RTY4 2548 aa8.56□□□□□ -1.04
USP40-201ENST00000251722 J3QL48 77 aa8.56□□□□□ -1.04
USP40-201ENST00000251722 Q75L30 129 aa8.56□□□□□ -1.04
USP40-201ENST00000251722 LINC00313P59037 77 aa8.55□□□□□ -1.04
USP40-201ENST00000251722 DEFB116Q30KQ4 102 aa8.55□□□□□ -1.04
USP40-201ENST00000251722 TRBV7-4A0A0J9YYF1 115 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 KRTAP10-11P60412 298 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 PLA2G2DQ9UNK4 145 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 SSBP3-AS1Q7Z2R9 100 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 LINC00476Q8WZB0 136 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 PRR34Q9NV39 138 aa8.54□□□□□ -1.04
USP40-201ENST00000251722 TLX1NBP0CAT3 122 aa8.53□□□□□ -1.04
USP40-201ENST00000251722 IGLV6-57P01721 117 aa8.52□□□□□ -1.05
USP40-201ENST00000251722 KCNQ1DNQ9H478 68 aa8.51□□□□□ -1.05
USP40-201ENST00000251722 IGKV2D-30A0A075B6S6 120 aa8.5□□□□□ -1.05
USP40-201ENST00000251722 IGKV2-30P06310 120 aa8.5□□□□□ -1.05
USP40-201ENST00000251722 ABCA12Q86UK0 2595 aa8.5□□□□□ -1.05
USP40-201ENST00000251722 ZNF462Q96JM2 2506 aa8.5□□□□□ -1.05
USP40-201ENST00000251722 ANKRD11Q6UB99 2663 aaPredicted RBP8.5□□□□□ -1.05
USP40-201ENST00000251722 IGLV1-50A0A075B6I6 118 aa8.49□□□□□ -1.05
USP40-201ENST00000251722 DOPEY1Q5JWR5 2465 aa8.48□□□□□ -1.05
USP40-201ENST00000251722 KRTAP1-3Q8IUG1 177 aa8.48□□□□□ -1.05
USP40-201ENST00000251722 C2CD3Q4AC94 2353 aa8.47□□□□□ -1.05
USP40-201ENST00000251722 A0A087WTM6 91 aa8.47□□□□□ -1.05
USP40-201ENST00000251722 OXTP01178 125 aa8.46□□□□□ -1.05
USP40-201ENST00000251722 JMJD1CQ15652 2540 aa8.46□□□□□ -1.06
USP40-201ENST00000251722 ZNF861PO60384 105 aa8.45□□□□□ -1.06
USP40-201ENST00000251722 C9orf163Q8N9P6 203 aa8.45□□□□□ -1.06
USP40-201ENST00000251722 OBSCN-AS1Q96MR7 158 aa8.45□□□□□ -1.06
USP40-201ENST00000251722 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
USP40-201ENST00000251722 SPINK1P00995 79 aa8.45□□□□□ -1.06
USP40-201ENST00000251722 KRTAP10-3P60369 221 aa8.44□□□□□ -1.06
USP40-201ENST00000251722 A8MWP4 228 aa8.43□□□□□ -1.06
USP40-201ENST00000251722 APLNQ9ULZ1 77 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms