RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SPINK7P58062 85 aa3.04□□□□□ -1.92
VPS29-210ENST00000552130 OBSCN-AS1Q96MR7 158 aa3.04□□□□□ -1.92
VPS29-210ENST00000552130 LINC00472Q9H8W2 130 aa3.04□□□□□ -1.92
VPS29-210ENST00000552130 NUP188Q5SRE5 1749 aa3.04□□□□□ -1.92
VPS29-210ENST00000552130 PREX1Q8TCU6 1659 aa3.04□□□□□ -1.92
VPS29-210ENST00000552130 PP632Q6XCG6 107 aa3.03□□□□□ -1.92
VPS29-210ENST00000552130 TMEM263Q8WUH6 116 aaKnown RBP3.03□□□□□ -1.92
VPS29-210ENST00000552130 IFT172Q9UG01 1749 aa3.02□□□□□ -1.93
VPS29-210ENST00000552130 PLCH1Q4KWH8 1693 aa3.02□□□□□ -1.93
VPS29-210ENST00000552130 RNF17Q9BXT8 1623 aaKnown RBP3.02□□□□□ -1.93
VPS29-210ENST00000552130 RALGAPBQ86X10 1494 aa3.02□□□□□ -1.93
VPS29-210ENST00000552130 FANCD2Q9BXW9 1451 aa3.02□□□□□ -1.93
VPS29-210ENST00000552130 C10orf113Q5VZT2 155 aa3.01□□□□□ -1.93
VPS29-210ENST00000552130 ZCCHC13Q8WW36 166 aaKnown RBP3.01□□□□□ -1.93
VPS29-210ENST00000552130 FAM103A1Q9BTL3 118 aaKnown RBP3.01□□□□□ -1.93
VPS29-210ENST00000552130 ALKQ9UM73 1620 aa3.01□□□□□ -1.93
VPS29-210ENST00000552130 GLI2P10070 1586 aa3□□□□□ -1.93
VPS29-210ENST00000552130 ZFHX3Q15911 3703 aa3□□□□□ -1.93
VPS29-210ENST00000552130 IFI6P09912 130 aa3□□□□□ -1.93
VPS29-210ENST00000552130 HMGA1P17096 107 aaKnown RBP3□□□□□ -1.93
VPS29-210ENST00000552130 ASCC3Q8N3C0 2202 aaKnown RBP2.99□□□□□ -1.93
VPS29-210ENST00000552130 NDUFB1O75438 58 aa2.99□□□□□ -1.93
VPS29-210ENST00000552130 LRP6O75581 1613 aa2.99□□□□□ -1.93
VPS29-210ENST00000552130 PAPPAQ13219 1627 aa2.99□□□□□ -1.93
VPS29-210ENST00000552130 DIP2AQ14689 1571 aa2.99□□□□□ -1.93
VPS29-210ENST00000552130 PKD1L3Q7Z443 1732 aa2.99□□□□□ -1.93
VPS29-210ENST00000552130 ITSN2Q9NZM3 1697 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 USP32Q8NFA0 1604 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 C10orf99Q6UWK7 81 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 UNQ6190/PRO20217Q6UXQ8 127 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 UBR3Q6ZT12 1888 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 C5P01031 1676 aa2.98□□□□□ -1.93
VPS29-210ENST00000552130 NHSL1Q5SYE7 1610 aa2.97□□□□□ -1.93
VPS29-210ENST00000552130 TRAV21A0A0B4J279 112 aa2.97□□□□□ -1.93
VPS29-210ENST00000552130 KRTAP13-4Q3LI77 160 aa2.97□□□□□ -1.93
VPS29-210ENST00000552130 F5P12259 2224 aa2.96□□□□□ -1.94
VPS29-210ENST00000552130 TRBV30A0A0K0K1B3 111 aa2.96□□□□□ -1.94
VPS29-210ENST00000552130 J3QRE1 110 aa2.96□□□□□ -1.94
VPS29-210ENST00000552130 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.96□□□□□ -1.94
VPS29-210ENST00000552130 NHSQ6T4R5 1651 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 ANKRD50Q9ULJ7 1429 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 A0A0D9SFI3 127 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 SPRR5A0A1B0GTR4 108 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 WIZO95785 1651 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 ALS2Q96Q42 1657 aa2.95□□□□□ -1.94
VPS29-210ENST00000552130 CLASP1Q7Z460 1538 aa2.94□□□□□ -1.94
VPS29-210ENST00000552130 FXYD6Q9H0Q3 95 aa2.94□□□□□ -1.94
VPS29-210ENST00000552130 CACNA1CQ13936 2221 aa2.94□□□□□ -1.94
VPS29-210ENST00000552130 SAMD9Q5K651 1589 aa2.94□□□□□ -1.94
VPS29-210ENST00000552130 TIAM2Q8IVF5 1701 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 ZNF831Q5JPB2 1677 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 NREPQ16612 68 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 Q6ZRX8 168 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 SMIM11BQ8TCY0 68 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 PLAC4Q8WY50 150 aa2.93□□□□□ -1.94
VPS29-210ENST00000552130 CICQ96RK0 1608 aaPredicted RBP2.93□□□□□ -1.94
VPS29-210ENST00000552130 A0A096LNT2 108 aa2.92□□□□□ -1.94
VPS29-210ENST00000552130 SNRPGP15A8MWD9 76 aa2.92□□□□□ -1.94
VPS29-210ENST00000552130 BRD3OSQ6XYD6 125 aa2.92□□□□□ -1.94
VPS29-210ENST00000552130 WFDC9Q8NEX5 89 aa2.92□□□□□ -1.94
VPS29-210ENST00000552130 LAMC1P11047 1609 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 NESP48681 1621 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 LINC01549A6NIU2 74 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 A0A1B0GUL6 1792 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 CFAP43Q8NDM7 1665 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 TSC2P49815 1807 aa2.91□□□□□ -1.94
VPS29-210ENST00000552130 LRRC37A2A6NM11 1700 aa2.9□□□□□ -1.94
VPS29-210ENST00000552130 MROH2AA6NES4 1674 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 E9PCH4 1651 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 GVQW2A0A096LPI5 108 aaPredicted RBP2.9□□□□□ -1.95
VPS29-210ENST00000552130 TRBV6-1A0A0K0K1D8 114 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 DEFB103AP81534 67 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 DEFB112Q30KQ8 113 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 GAFA1Q96PS6 74 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 MAST1Q9Y2H9 1570 aa2.9□□□□□ -1.95
VPS29-210ENST00000552130 PARP4Q9UKK3 1724 aaKnown RBP2.9□□□□□ -1.95
VPS29-210ENST00000552130 G3V318 75 aa2.89□□□□□ -1.95
VPS29-210ENST00000552130 NCR3O14931 201 aa2.89□□□□□ -1.95
VPS29-210ENST00000552130 COL14A1Q05707 1796 aaKnown RBP2.89□□□□□ -1.95
VPS29-210ENST00000552130 BAHCC1Q9P281 2608 aa2.89□□□□□ -1.95
VPS29-210ENST00000552130 COL4A4P53420 1690 aaPredicted RBP2.88□□□□□ -1.95
VPS29-210ENST00000552130 VWDEQ8N2E2 1590 aa2.88□□□□□ -1.95
VPS29-210ENST00000552130 BCORQ6W2J9 1755 aa2.88□□□□□ -1.95
VPS29-210ENST00000552130 LCE6AA0A183 80 aa2.88□□□□□ -1.95
VPS29-210ENST00000552130 A0A1B0GU69 56 aa2.88□□□□□ -1.95
VPS29-210ENST00000552130 SYCP2Q9BX26 1530 aa2.88□□□□□ -1.95
VPS29-210ENST00000552130 MROH2BQ7Z745 1585 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 PAPPA2Q9BXP8 1791 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 HAMPP81172 84 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 SPINK13Q1W4C9 94 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 LINC00575Q6W349 94 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 KMT2BQ9UMN6 2715 aaPredicted RBP2.87□□□□□ -1.95
VPS29-210ENST00000552130 LRRC7Q96NW7 1537 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 ABCC8Q09428 1581 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 CADP27708 2225 aa2.87□□□□□ -1.95
VPS29-210ENST00000552130 ANKRD17O75179 2603 aaKnown RBP2.86□□□□□ -1.95
VPS29-210ENST00000552130 TOP2AP11388 1531 aaKnown RBP2.85□□□□□ -1.95
VPS29-210ENST00000552130 CPS1P31327 1500 aa2.85□□□□□ -1.95
VPS29-210ENST00000552130 LINC00959A0A1B0GUT2 108 aa2.85□□□□□ -1.95
VPS29-210ENST00000552130 EIF2AK4Q9P2K8 1649 aaKnown RBP2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms