RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 DPH3P1Q9H4G8 78 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 MYCBP2O75592 4640 aa0.67□□□□□ -2.3
CD44-234ENST00000531873 MYH9P35579 1960 aaKnown RBP0.66□□□□□ -2.3
CD44-234ENST00000531873 ANK3Q12955 4377 aaKnown RBP0.66□□□□□ -2.3
CD44-234ENST00000531873 ANKRD36CQ5JPF3 1778 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 HECTD4Q9Y4D8 3996 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 SPTY2D1-AS1A0A0U1RR47 76 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 HIGD1CA8MV81 97 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 M0R2P5 195 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 TNFP01375 233 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 TFF1P04155 84 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 FXYD3Q14802 87 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 MYO7BQ6PIF6 2116 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 ATP11AUNQ6ZP68 121 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 SNX29P2Q8IUI4 249 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 MMGT1Q8N4V1 131 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 C5orf56Q8N8D9 126 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 ATP6V0E2Q8NHE4 81 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 PLAC4Q8WY50 150 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 DMAC1Q96GE9 116 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 DOCK1Q14185 1865 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 AHNAKQ09666 5890 aaKnown RBP0.66□□□□□ -2.3
CD44-234ENST00000531873 FRAS1Q86XX4 4008 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 DNAH10Q8IVF4 4471 aa0.66□□□□□ -2.3
CD44-234ENST00000531873 KMT2AQ03164 3969 aa0.65□□□□□ -2.3
CD44-234ENST00000531873 PI4KAP42356 2102 aa0.65□□□□□ -2.3
CD44-234ENST00000531873 TRBV20-1A0A075B6N2 111 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 M0R2Z0 102 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 PITX3O75364 302 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 RBP4P02753 201 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 POLR2JP52435 117 aaKnown RBP0.65□□□□□ -2.31
CD44-234ENST00000531873 NCS1P62166 190 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 ATOH7Q8N100 152 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 COPZ2Q9P299 210 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 PSME4Q14997 1843 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 DNAH9Q9NYC9 4486 aa0.65□□□□□ -2.31
CD44-234ENST00000531873 DSTQ03001 7570 aaKnown RBP0.64□□□□□ -2.31
CD44-234ENST00000531873 UQCRHLA0A096LP55 91 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 DEFB108AA8MXU0 73 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 M0R129 80 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 CCKP06307 115 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 CAV3P56539 151 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 UNQ5815/PRO19632Q6UWF5 114 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 CTAGE3PQ8IX95 158 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 WFDC9Q8NEX5 89 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 DYNLRB2Q8TF09 96 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 ATG5Q9H1Y0 275 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 TAS2R8Q9NYW2 309 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 NOP16Q9Y3C1 178 aaKnown RBP0.64□□□□□ -2.31
CD44-234ENST00000531873 DYNC1H1Q14204 4646 aaKnown RBP0.64□□□□□ -2.31
CD44-234ENST00000531873 CSMD3Q7Z407 3707 aa0.64□□□□□ -2.31
CD44-234ENST00000531873 FAT2Q9NYQ8 4349 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 MDN1Q9NU22 5596 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 PLECQ15149 4684 aaKnown RBP0.63□□□□□ -2.31
CD44-234ENST00000531873 HUWE1Q7Z6Z7 4374 aaKnown RBP0.63□□□□□ -2.31
CD44-234ENST00000531873 A0A096LNT2 108 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 TRAV2A0A0B4J234 112 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 TRBV10-1A0A0K0K1A3 114 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 J3QR89 54 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 YPEL1O60688 119 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 NCR2O95944 276 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 SLC25A6P12236 298 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 ARPC4P59998 168 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 S100A12P80511 92 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 ZNF56Q15929 161 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 C10orf99Q6UWK7 81 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 PPDPFLQ8WWR9 84 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 DOCK11Q5JSL3 2073 aa0.63□□□□□ -2.31
CD44-234ENST00000531873 DNAJC13O75165 2243 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 DNAH11Q96DT5 4516 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 HRNRQ86YZ3 2850 aaPredicted RBP0.62□□□□□ -2.31
CD44-234ENST00000531873 A0A0D9SG42 100 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 M0R2T5 61 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 NPFFO15130 113 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 COX4I1P13073 169 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 HMGA1P17096 107 aaKnown RBP0.62□□□□□ -2.31
CD44-234ENST00000531873 MIC13Q5XKP0 118 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 NDUFA11Q86Y39 141 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 BPESC1Q9GZL8 116 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 LRP1BQ9NZR2 4599 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 MUC12Q9UKN1 5478 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 MYH7P12883 1935 aa0.62□□□□□ -2.31
CD44-234ENST00000531873 MUC5BQ9HC84 5762 aaPredicted RBP0.62□□□□□ -2.31
CD44-234ENST00000531873 FAT1Q14517 4588 aa0.61□□□□□ -2.31
CD44-234ENST00000531873 APOBP04114 4563 aaKnown RBP0.61□□□□□ -2.31
CD44-234ENST00000531873 C10orf142B7Z368 130 aa0.61□□□□□ -2.31
CD44-234ENST00000531873 K7ERU9 68 aa0.61□□□□□ -2.31
CD44-234ENST00000531873 NDUFA2O43678 99 aa0.61□□□□□ -2.31
CD44-234ENST00000531873 RPS25P62851 125 aaKnown RBP0.61□□□□□ -2.31
CD44-234ENST00000531873 DCDP81605 110 aaKnown RBP0.61□□□□□ -2.31
CD44-234ENST00000531873 SDF2Q99470 211 aa0.61□□□□□ -2.31
CD44-234ENST00000531873 LYSTQ99698 3801 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 ZNF670-ZNF695F2Z2N8 137 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 J3QLW9 94 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 IFNA17P01571 189 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 HMGN1P05114 100 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 SPINK9Q5DT21 86 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 LINC01545Q5VT33 79 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 OR2T2Q6IF00 324 aa0.6□□□□□ -2.31
CD44-234ENST00000531873 KRTAP5-10Q6L8G5 202 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms