RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 LAMTOR3Q9UHA4 124 aa9.84□□□□□ -0.83
PCF11-204ENST00000530660 SPATA3Q8NHX4 192 aa9.83□□□□□ -0.84
PCF11-204ENST00000530660 A0A1W2PRX2 142 aa9.83□□□□□ -0.84
PCF11-204ENST00000530660 BBC3Q96PG8 261 aaPredicted RBP9.83□□□□□ -0.84
PCF11-204ENST00000530660 A8MTW9 85 aa9.82□□□□□ -0.84
PCF11-204ENST00000530660 DEFB131AP59861 70 aa9.82□□□□□ -0.84
PCF11-204ENST00000530660 SPG11Q96JI7 2443 aa9.81□□□□□ -0.84
PCF11-204ENST00000530660 UBE2L6O14933 153 aa9.81□□□□□ -0.84
PCF11-204ENST00000530660 RETNQ9HD89 108 aa9.81□□□□□ -0.84
PCF11-204ENST00000530660 PLAC8L1A1L4L8 177 aa9.8□□□□□ -0.84
PCF11-204ENST00000530660 C6orf99Q4VX62 202 aa9.8□□□□□ -0.84
PCF11-204ENST00000530660 PRR15Q8IV56 129 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 ITPR1Q14643 2758 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 BPY2O14599 106 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 Q8N9L7 120 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 TRGV1A0A0A0MS02 117 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 FUSP35637 526 aaKnown RBP eCLIP9.79□□□□□ -0.847e-10■■□□□ 12
PCF11-204ENST00000530660 CXCL6P80162 114 aa9.79□□□□□ -0.84
PCF11-204ENST00000530660 IGHV3OR16-9A0A0B4J2B5 98 aa9.78□□□□□ -0.84
PCF11-204ENST00000530660 IGHV4-61A0A0C4DH41 118 aa9.78□□□□□ -0.84
PCF11-204ENST00000530660 DAD1P61803 113 aa9.78□□□□□ -0.84
PCF11-204ENST00000530660 C6orf226Q5I0X4 101 aa9.78□□□□□ -0.84
PCF11-204ENST00000530660 Q6ZTC4 211 aa9.78□□□□□ -0.84
PCF11-204ENST00000530660 IGLV4-60A0A075B6I1 120 aa9.77□□□□□ -0.84
PCF11-204ENST00000530660 WNK1Q9H4A3 2382 aa9.77□□□□□ -0.84
PCF11-204ENST00000530660 LOC110117498A0A087WWA1 95 aa9.77□□□□□ -0.85
PCF11-204ENST00000530660 PRYO14603 147 aa9.77□□□□□ -0.85
PCF11-204ENST00000530660 GNLYP22749 145 aa9.76□□□□□ -0.85
PCF11-204ENST00000530660 Q6ZRU5 148 aa9.76□□□□□ -0.85
PCF11-204ENST00000530660 CR1P17927 2039 aa9.76□□□□□ -0.85
PCF11-204ENST00000530660 ZNF561-AS1K7EIQ3 104 aa9.75□□□□□ -0.85
PCF11-204ENST00000530660 LOC100131303A0A0U1RQF7 123 aa9.75□□□□□ -0.85
PCF11-204ENST00000530660 HIGD2AQ9BW72 106 aa9.75□□□□□ -0.85
PCF11-204ENST00000530660 HIVEP3Q5T1R4 2406 aa9.74□□□□□ -0.85
PCF11-204ENST00000530660 PSPHP1O15172 72 aa9.74□□□□□ -0.85
PCF11-204ENST00000530660 CELSR2Q9HCU4 2923 aa9.74□□□□□ -0.85
PCF11-204ENST00000530660 LINC00575Q6W349 94 aa9.74□□□□□ -0.85
PCF11-204ENST00000530660 C6orf223Q8N319 242 aa9.74□□□□□ -0.85
PCF11-204ENST00000530660 IGF2RP11717 2491 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 Q6ZRP5 223 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 Q8NDZ9 215 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 JMJD1CQ15652 2540 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 TMEM89A2RUT3 159 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 IGHV4-59P01825 116 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 UBE2E2Q96LR5 201 aa9.72□□□□□ -0.85
PCF11-204ENST00000530660 CD164L2Q6UWJ8 174 aa9.71□□□□□ -0.85
PCF11-204ENST00000530660 A8MU10 97 aa9.71□□□□□ -0.86
PCF11-204ENST00000530660 Q6ZQY7 126 aa9.71□□□□□ -0.86
PCF11-204ENST00000530660 MUC7Q8TAX7 377 aa9.71□□□□□ -0.86
PCF11-204ENST00000530660 DEFB136Q30KP8 78 aa9.7□□□□□ -0.86
PCF11-204ENST00000530660 LINC01006Q8NI28 216 aa9.69□□□□□ -0.86
PCF11-204ENST00000530660 DYNLRB2Q8TF09 96 aa9.69□□□□□ -0.86
PCF11-204ENST00000530660 C9orf116Q5BN46 136 aaPredicted RBP9.69□□□□□ -0.86
PCF11-204ENST00000530660 SLURP1P55000 103 aa9.69□□□□□ -0.86
PCF11-204ENST00000530660 OCR1Q9BZK8 76 aa9.69□□□□□ -0.86
PCF11-204ENST00000530660 C11orf44Q8N8P7 122 aa9.68□□□□□ -0.86
PCF11-204ENST00000530660 hDV103S1A0JD37 113 aa9.68□□□□□ -0.86
PCF11-204ENST00000530660 ERC2-IT1O76042 136 aa9.68□□□□□ -0.86
PCF11-204ENST00000530660 C18orf65Q6ZTR6 163 aa9.68□□□□□ -0.86
PCF11-204ENST00000530660 LINC01356Q8N9X3 169 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 TLN2Q9Y4G6 2542 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 INSP01308 110 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 CD164Q04900 197 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 C1orf158Q8N1D5 194 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 NBPF19A0A087WUL8 3843 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 KHDC1LQ5JSQ8 128 aa9.67□□□□□ -0.86
PCF11-204ENST00000530660 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.67□□□□□ -0.86
PCF11-204ENST00000530660 C9orf66Q5T8R8 295 aa9.66□□□□□ -0.86
PCF11-204ENST00000530660 CLPSL2Q6UWE3 100 aa9.66□□□□□ -0.86
PCF11-204ENST00000530660 DEFB112Q30KQ8 113 aa9.66□□□□□ -0.86
PCF11-204ENST00000530660 CHD6Q8TD26 2715 aa9.65□□□□□ -0.86
PCF11-204ENST00000530660 IGHV4-30-2A0A087WSY4 118 aa9.65□□□□□ -0.86
PCF11-204ENST00000530660 C1orf64Q8NEQ6 169 aa9.65□□□□□ -0.86
PCF11-204ENST00000530660 PRB2P02812 416 aaPredicted RBP9.65□□□□□ -0.86
PCF11-204ENST00000530660 MYO9AB2RTY4 2548 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 LINC00959A0A1B0GUT2 108 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 MSMBP08118 114 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 MAP6D1Q9H9H5 199 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 AKAP9Q99996 3911 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 Q1T7F1 81 aa9.64□□□□□ -0.87
PCF11-204ENST00000530660 IGKV4-1P06312 121 aa9.63□□□□□ -0.87
PCF11-204ENST00000530660 CELA1Q9UNI1 258 aa9.63□□□□□ -0.87
PCF11-204ENST00000530660 NOP10Q9NPE3 64 aaKnown RBP9.63□□□□□ -0.87
PCF11-204ENST00000530660 NIPBLQ6KC79 2804 aaeCLIP9.63□□□□□ -0.876e-27■□□□□ 8.6
PCF11-204ENST00000530660 PDE6GP18545 87 aa9.62□□□□□ -0.87
PCF11-204ENST00000530660 APCP25054 2843 aa9.62□□□□□ -0.87
PCF11-204ENST00000530660 TRGV2A0A075B6R0 118 aa9.62□□□□□ -0.87
PCF11-204ENST00000530660 TRAV22A0A0B4J277 110 aa9.62□□□□□ -0.87
PCF11-204ENST00000530660 MUC6Q6W4X9 2439 aa9.61□□□□□ -0.87
PCF11-204ENST00000530660 PRR4Q16378 134 aa9.61□□□□□ -0.87
PCF11-204ENST00000530660 FAM30AQ9NZY2 134 aa9.61□□□□□ -0.87
PCF11-204ENST00000530660 FN1P02751 2386 aaKnown RBP9.6□□□□□ -0.87
PCF11-204ENST00000530660 ZANQ9Y493 2812 aa9.6□□□□□ -0.87
PCF11-204ENST00000530660 TRBV6-8A0A0A6YYG3 113 aa9.6□□□□□ -0.87
PCF11-204ENST00000530660 Q8IZM0 81 aa9.6□□□□□ -0.87
PCF11-204ENST00000530660 LINC00269Q8N2A0 174 aa9.6□□□□□ -0.87
PCF11-204ENST00000530660 C10orf25Q5T742 122 aa9.59□□□□□ -0.87
PCF11-204ENST00000530660 LINC00612Q8N6U2 182 aa9.59□□□□□ -0.87
PCF11-204ENST00000530660 PLA2G2AP14555 144 aa9.59□□□□□ -0.87
PCF11-204ENST00000530660 A8MUN3 132 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms