RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ARFGEF3Q5TH69 2177 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 DOCK10Q96BY6 2186 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 OTOGLQ3ZCN5 2332 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 EP300Q09472 2414 aaPredicted RBP2.05□□□□□ -2.08
CD44-217ENST00000525348 ZFYVE26Q68DK2 2539 aa2.05□□□□□ -2.08
CD44-217ENST00000525348 MAST4O15021 2626 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 IGHV3-72A0A0B4J1Y9 119 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 TRAV10A0A0B4J240 114 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 TRAV12-1A0A0B4J245 112 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 CHKB-CPT1BH3BT56 60 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 CACNA1HO95180 2353 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 SVILO95425 2214 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 P0C880 135 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 DEFA4P12838 97 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 PLNP26678 52 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 EDDM3BP56851 147 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 ROMO1P60602 79 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 FREM1Q5H8C1 2179 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 ZGRF1Q86YA3 2104 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 DEFB119Q8N690 84 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 UBALD1Q8TB05 177 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 MED12Q93074 2177 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 AMELXQ99217 191 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 LIMD2Q9BT23 127 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 DSPP15924 2871 aaKnown RBP2.04□□□□□ -2.08
CD44-217ENST00000525348 IGSF10Q6WRI0 2623 aa2.04□□□□□ -2.08
CD44-217ENST00000525348 DIDO1Q9BTC0 2240 aaKnown RBP2.03□□□□□ -2.08
CD44-217ENST00000525348 IGHV3-43A0A0B4J1X8 118 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 F8VRH5 84 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 I3L3M4 83 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 IGKV1-17P01599 117 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 ARMS2P0C7Q2 107 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 ZNF137PP52743 207 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 TMEM254Q8TBM7 123 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 ARHGAP5-AS1Q96IT6 56 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 SCGB3A1Q96QR1 104 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 RPP21Q9H633 154 aaKnown RBP2.03□□□□□ -2.08
CD44-217ENST00000525348 DNAJC13O75165 2243 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 FREM3P0C091 2139 aa2.03□□□□□ -2.08
CD44-217ENST00000525348 SDK2Q58EX2 2172 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 PRR14LQ5THK1 2151 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 FLNBO75369 2602 aaKnown RBP2.02□□□□□ -2.09
CD44-217ENST00000525348 TEP1Q99973 2627 aaKnown RBP2.02□□□□□ -2.09
CD44-217ENST00000525348 IGLV2-18A0A075B6J9 118 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 CLPSL1A2RUU4 121 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 M0R135 149 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 HMGN4O00479 90 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 CLPSP04118 112 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 COX6CP09669 75 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 IGHV3-30-3P0DP02 117 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 IAPPP10997 89 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 FXYD7P58549 80 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 HCP5Q6MZN7 132 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 ZNF833PQ6ZTB9 187 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 CNEP1R1Q8N9A8 125 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 FGF23Q9GZV9 251 aaPredicted RBP2.02□□□□□ -2.09
CD44-217ENST00000525348 XAGE1AQ9HD64 81 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 TMEM167BQ9NRX6 74 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 PLAC8Q9NZF1 115 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 SMG1Q96Q15 3661 aaKnown RBP2.02□□□□□ -2.09
CD44-217ENST00000525348 DMXL2Q8TDJ6 3036 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 MYO18BQ8IUG5 2567 aa2.02□□□□□ -2.09
CD44-217ENST00000525348 IGF2RP11717 2491 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 IGHV3OR16-8A0A075B7F1 116 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 PIGBOS1A0A0B4J2F0 54 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 A0A0J9YX75 114 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 LCE6AA0A183 80 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 CXorf51AA0A1B0GTR3 108 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 A0A1W2PNM2 257 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 H7C2G1 150 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 NDUFA3O95167 84 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 IGLV3-19P01714 112 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 TRGV3P03979 118 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 CTSGP08311 255 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 TLX1NBP0CAT3 122 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 KRTAP13-2Q52LG2 175 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 Q5W150 140 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 LYZL1Q6UWQ5 148 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 ENHOQ6UWT2 76 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 LYPD2Q6UXB3 125 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 LINC00322Q6ZN03 302 aaPredicted RBP2.01□□□□□ -2.09
CD44-217ENST00000525348 MUSTN1Q8IVN3 82 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 WFDC9Q8NEX5 89 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 NAV2Q8IVL1 2488 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 HECTD1Q9ULT8 2610 aa2.01□□□□□ -2.09
CD44-217ENST00000525348 MALRD1Q5VYJ5 2156 aa2□□□□□ -2.09
CD44-217ENST00000525348 FREM2Q5SZK8 3169 aa2□□□□□ -2.09
CD44-217ENST00000525348 PIEZO2Q9H5I5 2752 aa2□□□□□ -2.09
CD44-217ENST00000525348 CR1P17927 2039 aa2□□□□□ -2.09
CD44-217ENST00000525348 IGLV11-55A0A075B6I3 123 aa2□□□□□ -2.09
CD44-217ENST00000525348 IGHV3-74A0A0B4J1X5 117 aa2□□□□□ -2.09
CD44-217ENST00000525348 A0A1B0GUT8 65 aa2□□□□□ -2.09
CD44-217ENST00000525348 A6NED7 52 aa2□□□□□ -2.09
CD44-217ENST00000525348 D6R8Y8 96 aa2□□□□□ -2.09
CD44-217ENST00000525348 M0R1W7 72 aa2□□□□□ -2.09
CD44-217ENST00000525348 LECT2O14960 151 aa2□□□□□ -2.09
CD44-217ENST00000525348 NREPQ16612 68 aa2□□□□□ -2.09
CD44-217ENST00000525348 SPANXN5Q5MJ07 72 aa2□□□□□ -2.09
CD44-217ENST00000525348 C10orf128Q5T292 105 aa2□□□□□ -2.09
CD44-217ENST00000525348 CASC2Q6XLA1 102 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms