RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 NACAE9PAV3 2078 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 COL7A1Q02388 2944 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 F5H768 121 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 HOXD3P31249 432 aaPredicted RBP6.8□□□□□ -1.32
HDAC3-205ENST00000469550 C2orf48Q96LS8 159 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 FAM218AQ96MZ4 157 aa6.8□□□□□ -1.32
HDAC3-205ENST00000469550 LINC00694P0DN24 101 aa6.79□□□□□ -1.32
HDAC3-205ENST00000469550 RPS28P62857 69 aaKnown RBP6.79□□□□□ -1.32
HDAC3-205ENST00000469550 KHDC1LQ5JSQ8 128 aa6.79□□□□□ -1.32
HDAC3-205ENST00000469550 TRBV10-1A0A0K0K1A3 114 aa6.78□□□□□ -1.32
HDAC3-205ENST00000469550 OBSCN-AS1Q96MR7 158 aa6.78□□□□□ -1.32
HDAC3-205ENST00000469550 CDC42SE2Q9NRR3 84 aa6.78□□□□□ -1.32
HDAC3-205ENST00000469550 A0A0U1RRA0 63 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 H0YGX0 51 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 J3KT08 172 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 INSP01308 110 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 PRM2P04554 102 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 GAGE2AQ6NT46 116 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 CRPP02741 224 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 RPL36AP83881 106 aaKnown RBP6.77□□□□□ -1.33
HDAC3-205ENST00000469550 Q6JHZ5 121 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 RPL36ALQ969Q0 106 aaKnown RBP6.77□□□□□ -1.33
HDAC3-205ENST00000469550 RYR3Q15413 4870 aa6.77□□□□□ -1.33
HDAC3-205ENST00000469550 C18orf65Q6ZTR6 163 aa6.76□□□□□ -1.33
HDAC3-205ENST00000469550 IL17DQ8TAD2 202 aa6.76□□□□□ -1.33
HDAC3-205ENST00000469550 NBEAL2Q6ZNJ1 2754 aa6.76□□□□□ -1.33
HDAC3-205ENST00000469550 TRAV13-1A0A0B4J241 112 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 RPL18AQ02543 176 aaKnown RBP6.75□□□□□ -1.33
HDAC3-205ENST00000469550 NTM-AS1Q6ZSK4 140 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 IGKV2-28A0A075B6P5 120 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 CCL24O00175 119 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 DNAL4O96015 105 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 IGKV2D-28P01615 120 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 MAP6D1Q9H9H5 199 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 Q9HAA7 133 aa6.75□□□□□ -1.33
HDAC3-205ENST00000469550 TENM3Q9P273 2699 aa6.74□□□□□ -1.33
HDAC3-205ENST00000469550 C9orf66Q5T8R8 295 aa6.74□□□□□ -1.33
HDAC3-205ENST00000469550 LINC00337Q8N6G1 96 aa6.74□□□□□ -1.33
HDAC3-205ENST00000469550 SND1-IT1Q9HBX3 110 aa6.74□□□□□ -1.33
HDAC3-205ENST00000469550 KLK5Q9Y337 293 aaPredicted RBP6.74□□□□□ -1.33
HDAC3-205ENST00000469550 K7EQD1 137 aa6.73□□□□□ -1.33
HDAC3-205ENST00000469550 DYNC2H1Q8NCM8 4307 aaKnown RBP6.73□□□□□ -1.33
HDAC3-205ENST00000469550 SERP2Q8N6R1 65 aa6.73□□□□□ -1.33
HDAC3-205ENST00000469550 SMIM11BQ8TCY0 68 aa6.73□□□□□ -1.33
HDAC3-205ENST00000469550 COX7B2Q8TF08 81 aa6.73□□□□□ -1.33
HDAC3-205ENST00000469550 C4orf3Q8WVX3 66 aa6.73□□□□□ -1.33
HDAC3-205ENST00000469550 SLURP1P55000 103 aa6.72□□□□□ -1.33
HDAC3-205ENST00000469550 MIR7-3HGQ8N6C7 128 aa6.72□□□□□ -1.33
HDAC3-205ENST00000469550 A0A087WYN8 130 aa6.71□□□□□ -1.33
HDAC3-205ENST00000469550 IBA57-AS1B1ANH7 110 aa6.71□□□□□ -1.33
HDAC3-205ENST00000469550 C3orf84H3BNL1 204 aa6.71□□□□□ -1.33
HDAC3-205ENST00000469550 TMEM258P61165 79 aa6.71□□□□□ -1.33
HDAC3-205ENST00000469550 TMEM243Q9BU79 118 aa6.71□□□□□ -1.33
HDAC3-205ENST00000469550 TRGV1A0A0A0MS02 117 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 LOC107984640A0A0U1RRK4 108 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 C5orf47Q569G3 176 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 UPK3BQ9BT76 320 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 LINC00846Q9NV44 126 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 SORL1Q92673 2214 aa6.71□□□□□ -1.34
HDAC3-205ENST00000469550 HUWE1Q7Z6Z7 4374 aaKnown RBP6.7□□□□□ -1.34
HDAC3-205ENST00000469550 hADV29S1A0JD25 119 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 UBE2L6O14933 153 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 DEFB136Q30KP8 78 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 DEFB114Q30KQ6 69 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 FAM19A5Q7Z5A7 132 aaPredicted RBP6.7□□□□□ -1.34
HDAC3-205ENST00000469550 C1orf158Q8N1D5 194 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 C14orf132Q9NPU4 83 aa6.7□□□□□ -1.34
HDAC3-205ENST00000469550 CCL18P55774 89 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 DYNLRB2Q8TF09 96 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 SMIM9A6NGZ8 99 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 LINC00158P58513 81 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 S100A7L2Q5SY68 101 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 C9orf129Q5T035 196 aaKnown RBP6.69□□□□□ -1.34
HDAC3-205ENST00000469550 OR13C6PQ8NH95 151 aa6.69□□□□□ -1.34
HDAC3-205ENST00000469550 TRAV25A0A0B4J276 109 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 LINC01561Q8N1V8 128 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 LINC00167Q96N53 147 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 XCL2Q9UBD3 114 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 IGHV3OR16-9A0A0B4J2B5 98 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 IGKV3D-7A0A0C4DH55 119 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 USP17L23D6RBM5 183 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 LECT2O14960 151 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 CCKP06307 115 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 ATP5EP2Q5VTU8 51 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 DPH3Q96FX2 82 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 ORMDL1Q9P0S3 153 aa6.68□□□□□ -1.34
HDAC3-205ENST00000469550 A0A087WZ39 114 aa6.67□□□□□ -1.34
HDAC3-205ENST00000469550 TRBV6-4A0A1B0GX49 114 aa6.67□□□□□ -1.34
HDAC3-205ENST00000469550 Q6ZTI0 123 aa6.67□□□□□ -1.34
HDAC3-205ENST00000469550 STAB2Q8WWQ8 2551 aa6.67□□□□□ -1.34
HDAC3-205ENST00000469550 JMJD7-PLA2G4BH0Y9G9 81 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 ODF3L2Q3SX64 289 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 STHQ8IWL8 128 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 MUC7Q8TAX7 377 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 DNAH7Q8WXX0 4024 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 RYR2Q92736 4967 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 LYPD5Q6UWN5 251 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 TOMM7Q9P0U1 55 aa6.66□□□□□ -1.34
HDAC3-205ENST00000469550 TRBV10-3A0A0K0K1G6 114 aa6.65□□□□□ -1.34
HDAC3-205ENST00000469550 NDUFC2-KCTD14E9PQ53 114 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms