RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 IGKV1-16P04430 117 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 RPL39P62891 51 aaKnown RBP1.75□□□□□ -2.13
LINC01040-201ENST00000425048 NREPQ16612 68 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 C10orf55Q5SWW7 151 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 ATP11AUNQ6ZP68 121 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 LINC00269Q8N2A0 174 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 LINC00337Q8N6G1 96 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 Q8TAT8 98 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 TMEM254Q8TBM7 123 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 LINC00308Q8TCZ7 52 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 DYNLRB2Q8TF09 96 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 Q9Y3F1 56 aa1.75□□□□□ -2.13
LINC01040-201ENST00000425048 PTPRQQ9UMZ3 2332 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 IGLV3-12A0A075B6K2 115 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 TRBV6-5A0A0K0K1A5 114 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 IGKV2-29A2NJV5 120 aaPredicted RBP1.74□□□□□ -2.13
LINC01040-201ENST00000425048 I3L2K1 104 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 PSPHP1O15172 72 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 PSCAO43653 123 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 UBE2AP49459 152 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 LINC00313P59037 77 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 MIR7-3HGQ8N6C7 128 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 C1orf64Q8NEQ6 169 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 LEAP2Q969E1 77 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 NDUFA12Q9UI09 145 aa1.74□□□□□ -2.13
LINC01040-201ENST00000425048 SETXQ7Z333 2677 aaKnown RBP1.73□□□□□ -2.13
LINC01040-201ENST00000425048 RP1L1Q8IWN7 2480 aaPredicted RBP1.73□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV3-21A0A0B4J1V1 117 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 LCE6AA0A183 80 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 F6UB75 175 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 NDUFA1O15239 70 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 PPP1R17O96001 155 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 RPS21P63220 83 aaKnown RBP1.73□□□□□ -2.13
LINC01040-201ENST00000425048 CLEC19AQ6UXS0 136 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 CYP4F30PQ9H0H9 118 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 LINC00574Q9H8X3 128 aa1.73□□□□□ -2.13
LINC01040-201ENST00000425048 CACNA1GO43497 2377 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 ZNF462Q96JM2 2506 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 IGLV3-9A0A075B6K5 115 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 HCG22E2RYF7 251 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 H0YGX0 51 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 K7EIM0 57 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 M0R2N4 97 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 MGPP08493 103 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 KIAA0087Q14695 138 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 LINC01554Q52M75 96 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 SPANXN1Q5VSR9 72 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 Q6ZTI0 123 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 ITLN2Q8WWU7 325 aaPredicted RBP1.72□□□□□ -2.13
LINC01040-201ENST00000425048 UBL5Q9BZL1 73 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 ORMDL1Q9P0S3 153 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 ZNRD1Q9P1U0 126 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 KIAA0100Q14667 2235 aaKnown RBP1.72□□□□□ -2.13
LINC01040-201ENST00000425048 CNTRLQ7Z7A1 2325 aa1.72□□□□□ -2.13
LINC01040-201ENST00000425048 IGHV3OR16-13A0A075B7E8 117 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 LOC110117498A0A087WWA1 95 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 TRBV6-8A0A0A6YYG3 113 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 TRBV10-1A0A0K0K1A3 114 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 LOC101927531A0A1B0GV80 90 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 CLPSL1A2RUU4 121 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 JMJD7-PLA2G4BH0Y9G9 81 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 C3orf84H3BNL1 204 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 LECT2O14960 151 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 RNASE3P12724 160 aaKnown RBP1.71□□□□□ -2.14
LINC01040-201ENST00000425048 RPL27AP46776 148 aaKnown RBP1.71□□□□□ -2.14
LINC01040-201ENST00000425048 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 Q6ZQT0 140 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 SMIM11BQ8TCY0 68 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 HIGD2AQ9BW72 106 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 CDC42SE1Q9NRR8 79 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 A0A0C4DFX4 3053 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 PCNTO95613 3336 aa1.71□□□□□ -2.14
LINC01040-201ENST00000425048 TRAV21A0A0B4J279 112 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 CHKB-CPT1BH3BT56 60 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 BPY2O14599 106 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 MAST4O15021 2626 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 LY6HO94772 140 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 CRPP02741 224 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 CCL3P10147 92 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 MP68P56378 58 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 SPTSSBQ8NFR3 76 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 DEFB104AQ8WTQ1 72 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 CDC42SE2Q9NRR3 84 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 PLAC8Q9NZF1 115 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 LENEPQ9Y5L5 61 aa1.7□□□□□ -2.14
LINC01040-201ENST00000425048 CR1P17927 2039 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 URB1O60287 2271 aaKnown RBP1.69□□□□□ -2.14
LINC01040-201ENST00000425048 ABCA1O95477 2261 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 SORL1Q92673 2214 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.69□□□□□ -2.14
LINC01040-201ENST00000425048 A0A096LNT2 108 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 M0QY20 66 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 RNASE13Q5GAN3 156 aaKnown RBP1.69□□□□□ -2.14
LINC01040-201ENST00000425048 ZFAND2AQ8N6M9 145 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 FDCSPQ8NFU4 85 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 LIMD2Q9BT23 127 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 PRR15LQ9BU68 103 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 CDKN2A-AS1Q9UH64 79 aa1.69□□□□□ -2.14
LINC01040-201ENST00000425048 IGLV1-50A0A075B6I6 118 aa1.68□□□□□ -2.14
LINC01040-201ENST00000425048 B4DSR2 109 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms