RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 DSPP15924 2871 aaKnown RBP2.3□□□□□ -2.04
HMGB1-204ENST00000399489 KIAA1549Q9HCM3 1950 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 IGLV4-60A0A075B6I1 120 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 FAM223BA6NKX1 122 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 KRTAP26-1Q6PEX3 210 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 ZNF833PQ6ZTB9 187 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 Q6ZTI0 123 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 KRTAP11-1Q8IUC1 163 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 FAM103A1Q9BTL3 118 aaKnown RBP2.3□□□□□ -2.04
HMGB1-204ENST00000399489 COL11A1P12107 1806 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-204ENST00000399489 MED12LQ86YW9 2145 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 NBEAQ8NFP9 2946 aa2.3□□□□□ -2.04
HMGB1-204ENST00000399489 RELNP78509 3460 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 IGKV2D-24A0A075B6R9 120 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 TRBV10-1A0A0K0K1A3 114 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 H3BVH4 76 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 UBE2D1P51668 147 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 DEFB134Q4QY38 66 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 LINC00167Q96N53 147 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 CDC42SE2Q9NRR3 84 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 TMEM14BQ9NUH8 114 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 DNHD1Q96M86 4753 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 SPTA1P02549 2419 aa2.29□□□□□ -2.04
HMGB1-204ENST00000399489 PTPN13Q12923 2485 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 IGLV3-32A0A0A0MS00 114 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 Q6JHZ5 121 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 PSENENQ9NZ42 101 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 LAMA1P25391 3075 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 MUC22E2RYF6 1773 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-204ENST00000399489 ITPR1Q14643 2758 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 KALRNO60229 2985 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 CPAMD8Q8IZJ3 1885 aa2.28□□□□□ -2.04
HMGB1-204ENST00000399489 C2orf70A6NJV1 201 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 CTSGP08311 255 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 IFI27P40305 119 aaPredicted RBP2.28□□□□□ -2.05
HMGB1-204ENST00000399489 CSAG1Q6PB30 78 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 LYPD1Q8N2G4 141 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 USP9XQ93008 2570 aaPredicted RBP2.28□□□□□ -2.05
HMGB1-204ENST00000399489 IGSF10Q6WRI0 2623 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 EML5Q05BV3 1969 aa2.28□□□□□ -2.05
HMGB1-204ENST00000399489 SEC16AO15027 2179 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 MYO18BQ8IUG5 2567 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 HECTD1Q9ULT8 2610 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 COL12A1Q99715 3063 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 ZNF462Q96JM2 2506 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 HMGN4O00479 90 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 SPINT3P49223 89 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 ELOF1P60002 83 aaKnown RBP2.27□□□□□ -2.05
HMGB1-204ENST00000399489 CNBPP62633 177 aaKnown RBP2.27□□□□□ -2.05
HMGB1-204ENST00000399489 PDE6HQ13956 83 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 ATP5EP2Q5VTU8 51 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 DMAC1Q96GE9 116 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 NDUFA4L2Q9NRX3 87 aa2.27□□□□□ -2.05
HMGB1-204ENST00000399489 TRBV6-8A0A0A6YYG3 113 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 LOC101927531A0A1B0GV80 90 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 LRCOL1A6NCL2 159 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 HIGD1CA8MV81 97 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 LEPROTL1O95214 131 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 IGHV3-33P01772 117 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 SAA2P0DJI9 122 aaPredicted RBP2.26□□□□□ -2.05
HMGB1-204ENST00000399489 AKAP13Q12802 2813 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 ASXL3Q9C0F0 2248 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 PROK2Q9HC23 129 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 NBPF19A0A087WUL8 3843 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 KIAA1549LQ6ZVL6 1849 aa2.26□□□□□ -2.05
HMGB1-204ENST00000399489 CFAP46Q8IYW2 2715 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 TRBV6-7A0A0A0MS04 114 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 CD52P31358 61 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 MRPL36Q9P0J6 103 aaKnown RBP2.25□□□□□ -2.05
HMGB1-204ENST00000399489 MED13Q9UHV7 2174 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 ARHGAP32A7KAX9 2087 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 HEATR5BQ9P2D3 2071 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 BSNQ9UPA5 3926 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 D6R8Y8 96 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 ARMS2P0C7Q2 107 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 ATXN8Q156A1 80 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 C1orf137Q5JT78 98 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 MUSTN1Q8IVN3 82 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 UBE2D4Q9Y2X8 147 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 LENEPQ9Y5L5 61 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 MYO16Q9Y6X6 1858 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 CSMD1Q96PZ7 3565 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 APC2O95996 2303 aa2.25□□□□□ -2.05
HMGB1-204ENST00000399489 TENM4Q6N022 2769 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 FREM3P0C091 2139 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 ANKRD17O75179 2603 aaKnown RBP2.24□□□□□ -2.05
HMGB1-204ENST00000399489 A0A0G2JQZ4 141 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 NUPR2A6NF83 97 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 TOMM5Q8N4H5 51 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 F5P12259 2224 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 SDK2Q58EX2 2172 aa2.24□□□□□ -2.05
HMGB1-204ENST00000399489 C10orf142B7Z368 130 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 PPP1R17O96001 155 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 TPRXLQ17RH7 258 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 KRTAP13-2Q52LG2 175 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 DEFB107AQ8IZN7 70 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 ORMDL1Q9P0S3 153 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 PDCD11Q14690 1871 aaKnown RBP2.23□□□□□ -2.05
HMGB1-204ENST00000399489 TEP1Q99973 2627 aaKnown RBP2.23□□□□□ -2.05
HMGB1-204ENST00000399489 ACACAQ13085 2346 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms