RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 HIGD2BQ4VC39 106 aa14.48□□□□□ -0.09
HOXA4-201ENST00000360046 USP17L23D6RBM5 183 aa14.46□□□□□ -0.09
HOXA4-201ENST00000360046 LECT2O14960 151 aa14.46□□□□□ -0.09
HOXA4-201ENST00000360046 C6orf223Q8N319 242 aa14.46□□□□□ -0.09
HOXA4-201ENST00000360046 LINC00526Q96FQ7 95 aa14.46□□□□□ -0.09
HOXA4-201ENST00000360046 NDUFA1O15239 70 aa14.46□□□□□ -0.1
HOXA4-201ENST00000360046 CKS1BP61024 79 aa14.46□□□□□ -0.1
HOXA4-201ENST00000360046 KIAA0087Q14695 138 aa14.46□□□□□ -0.1
HOXA4-201ENST00000360046 BVES-AS1Q5T3Y7 98 aa14.46□□□□□ -0.1
HOXA4-201ENST00000360046 ZNF561-AS1K7EIQ3 104 aa14.45□□□□□ -0.1
HOXA4-201ENST00000360046 SCGB1D4Q6XE38 83 aa14.45□□□□□ -0.1
HOXA4-201ENST00000360046 C2orf82Q6UX34 121 aa14.44□□□□□ -0.1
HOXA4-201ENST00000360046 Q6ZRN7 208 aaPredicted RBP14.44□□□□□ -0.1
HOXA4-201ENST00000360046 C1orf134Q5TEV5 83 aa14.44□□□□□ -0.1
HOXA4-201ENST00000360046 ZNF625Q96I27 306 aaPredicted RBP14.44□□□□□ -0.1
HOXA4-201ENST00000360046 GVQW2A0A096LPI5 108 aaPredicted RBP14.42□□□□□ -0.1
HOXA4-201ENST00000360046 CXCL5P42830 114 aa14.42□□□□□ -0.1
HOXA4-201ENST00000360046 C2orf91Q6ZV80 131 aa14.41□□□□□ -0.1
HOXA4-201ENST00000360046 SFTA2Q6UW10 78 aa14.41□□□□□ -0.1
HOXA4-201ENST00000360046 A0A0J9YXY3 114 aa14.4□□□□□ -0.1
HOXA4-201ENST00000360046 HERV-K104P63124 156 aa14.4□□□□□ -0.1
HOXA4-201ENST00000360046 WFDC2Q14508 124 aa14.4□□□□□ -0.1
HOXA4-201ENST00000360046 NTN5Q8WTR8 489 aaPredicted RBP14.4□□□□□ -0.1
HOXA4-201ENST00000360046 DNAH2Q9P225 4427 aa14.4□□□□□ -0.1
HOXA4-201ENST00000360046 HYDINQ4G0P3 5121 aa14.39□□□□□ -0.11
HOXA4-201ENST00000360046 HSD52Q0P140 79 aa14.38□□□□□ -0.11
HOXA4-201ENST00000360046 CAMK2N2Q96S95 79 aa14.38□□□□□ -0.11
HOXA4-201ENST00000360046 UNQ6190/PRO20217Q6UXQ8 127 aa14.38□□□□□ -0.11
HOXA4-201ENST00000360046 HIGD1BQ9P298 99 aa14.38□□□□□ -0.11
HOXA4-201ENST00000360046 SACSQ9NZJ4 4579 aa14.37□□□□□ -0.11
HOXA4-201ENST00000360046 MEIG1Q5JSS6 88 aa14.37□□□□□ -0.11
HOXA4-201ENST00000360046 C2orf48Q96LS8 159 aa14.37□□□□□ -0.11
HOXA4-201ENST00000360046 C10orf25Q5T742 122 aa14.36□□□□□ -0.11
HOXA4-201ENST00000360046 A6NDN8 102 aa14.35□□□□□ -0.11
HOXA4-201ENST00000360046 UBE2V1Q13404 147 aa14.35□□□□□ -0.11
HOXA4-201ENST00000360046 A0A0U1RRA0 63 aa14.34□□□□□ -0.11
HOXA4-201ENST00000360046 LRCOL1A6NCL2 159 aa14.34□□□□□ -0.11
HOXA4-201ENST00000360046 TAX1BP3O14907 124 aa14.34□□□□□ -0.11
HOXA4-201ENST00000360046 C14orf177Q52M58 125 aa14.34□□□□□ -0.11
HOXA4-201ENST00000360046 RYR3Q15413 4870 aa14.33□□□□□ -0.11
HOXA4-201ENST00000360046 CIRBPQ14011 172 aaKnown RBP14.33□□□□□ -0.12
HOXA4-201ENST00000360046 TMEM238C9JI98 176 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 SYCNQ0VAF6 134 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 Q6ZRU5 148 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 ERG28Q9UKR5 140 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 F8WDY8 70 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 SMIM13P0DJ93 91 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 PFN2P35080 140 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 PTTG1IPP53801 180 aa14.32□□□□□ -0.12
HOXA4-201ENST00000360046 C9orf116Q5BN46 136 aaPredicted RBP14.32□□□□□ -0.12
HOXA4-201ENST00000360046 C6orf48Q9UBA6 75 aa14.31□□□□□ -0.12
HOXA4-201ENST00000360046 TIMM17BO60830 172 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 LINC00158P58513 81 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 SRSF9Q13242 221 aaKnown RBP eCLIP14.29□□□□□ -0.12
HOXA4-201ENST00000360046 CARD19Q96LW7 228 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 HIST1H4GQ99525 98 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 LITAFQ99732 161 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.29□□□□□ -0.12
HOXA4-201ENST00000360046 TRBV30A0A0K0K1B3 111 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 SLPIP03973 132 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 ADAMTSL4-AS1Q5T5F5 129 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 DAND5Q8N907 189 aa14.29□□□□□ -0.12
HOXA4-201ENST00000360046 A0A087WTM6 91 aa14.28□□□□□ -0.12
HOXA4-201ENST00000360046 RTL8CO15255 209 aa14.28□□□□□ -0.12
HOXA4-201ENST00000360046 VAMP3Q15836 100 aa14.28□□□□□ -0.12
HOXA4-201ENST00000360046 FRAS1Q86XX4 4008 aa14.28□□□□□ -0.12
HOXA4-201ENST00000360046 SPANXB1Q9NS25 103 aaPredicted RBP14.27□□□□□ -0.12
HOXA4-201ENST00000360046 TAL2Q16559 108 aa14.27□□□□□ -0.13
HOXA4-201ENST00000360046 Q8N814 137 aa14.26□□□□□ -0.13
HOXA4-201ENST00000360046 COX17Q14061 63 aa14.25□□□□□ -0.13
HOXA4-201ENST00000360046 NPC2P61916 151 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 TNP2Q05952 138 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 MIR7-3HGQ8N6C7 128 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 SPANXDQ9BXN6 97 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 SPANXCQ9NY87 97 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 RYR2Q92736 4967 aa14.24□□□□□ -0.13
HOXA4-201ENST00000360046 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.24□□□□□ -0.13
HOXA4-201ENST00000360046 DNAH17Q9UFH2 4485 aa14.23□□□□□ -0.13
HOXA4-201ENST00000360046 CNBPP62633 177 aaKnown RBP14.23□□□□□ -0.13
HOXA4-201ENST00000360046 Q6ZVH6 145 aa14.23□□□□□ -0.13
HOXA4-201ENST00000360046 GCSHP23434 173 aa14.22□□□□□ -0.13
HOXA4-201ENST00000360046 C9orf118A6NHY6 69 aa14.21□□□□□ -0.13
HOXA4-201ENST00000360046 RNF151Q2KHN1 245 aa14.21□□□□□ -0.14
HOXA4-201ENST00000360046 CEND1Q8N111 149 aa14.2□□□□□ -0.14
HOXA4-201ENST00000360046 MUSTN1Q8IVN3 82 aa14.19□□□□□ -0.14
HOXA4-201ENST00000360046 NDUFC2-KCTD14E9PQ53 114 aa14.18□□□□□ -0.14
HOXA4-201ENST00000360046 LINC00308Q8TCZ7 52 aa14.18□□□□□ -0.14
HOXA4-201ENST00000360046 GTF2H5Q6ZYL4 71 aa14.18□□□□□ -0.14
HOXA4-201ENST00000360046 IFITM1P13164 125 aa14.17□□□□□ -0.14
HOXA4-201ENST00000360046 RPL18AQ02543 176 aaKnown RBP14.17□□□□□ -0.14
HOXA4-201ENST00000360046 EIF4EBP3O60516 100 aaPredicted RBP14.16□□□□□ -0.14
HOXA4-201ENST00000360046 COPS9Q8WXC6 57 aa14.16□□□□□ -0.14
HOXA4-201ENST00000360046 SND1-IT1Q9HBX3 110 aa14.16□□□□□ -0.14
HOXA4-201ENST00000360046 HECTD4Q9Y4D8 3996 aa14.16□□□□□ -0.14
HOXA4-201ENST00000360046 SOSTDC1Q6X4U4 206 aa14.15□□□□□ -0.14
HOXA4-201ENST00000360046 FXYD2P54710 66 aa14.15□□□□□ -0.14
HOXA4-201ENST00000360046 GAGE2EQ4V326 116 aa14.15□□□□□ -0.14
HOXA4-201ENST00000360046 Q6ZRP5 223 aa14.15□□□□□ -0.14
HOXA4-201ENST00000360046 GAGE2DQ9UEU5 116 aa14.15□□□□□ -0.14
HOXA4-201ENST00000360046 RPL24P83731 157 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms