RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 MIR7-3HGQ8N6C7 128 aa11.22□□□□□ -0.61
HMGA1-202ENST00000347617 SMIM11BQ8TCY0 68 aa11.22□□□□□ -0.61
HMGA1-202ENST00000347617 IGKV2-28A0A075B6P5 120 aa11.21□□□□□ -0.61
HMGA1-202ENST00000347617 IGKV2D-28P01615 120 aa11.21□□□□□ -0.61
HMGA1-202ENST00000347617 NDUFC2-KCTD14E9PQ53 114 aa11.21□□□□□ -0.62
HMGA1-202ENST00000347617 LOC107984640A0A0U1RRK4 108 aa11.2□□□□□ -0.62
HMGA1-202ENST00000347617 NTM-AS1Q6ZSK4 140 aa11.2□□□□□ -0.62
HMGA1-202ENST00000347617 UPK3BQ9BT76 320 aa11.2□□□□□ -0.62
HMGA1-202ENST00000347617 A0A087WYN8 130 aa11.19□□□□□ -0.62
HMGA1-202ENST00000347617 WIPF1O43516 503 aa11.19□□□□□ -0.62
HMGA1-202ENST00000347617 C14orf132Q9NPU4 83 aa11.19□□□□□ -0.62
HMGA1-202ENST00000347617 USP17L23D6RBM5 183 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 JMJD7-PLA2G4BH0Y9G9 81 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 LINC00846Q9NV44 126 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 ORMDL1Q9P0S3 153 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 IGLV1-51P01701 117 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 CCKP06307 115 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 DPH3Q96FX2 82 aa11.18□□□□□ -0.62
HMGA1-202ENST00000347617 TRGV1A0A0A0MS02 117 aa11.17□□□□□ -0.62
HMGA1-202ENST00000347617 CCL18P55774 89 aa11.17□□□□□ -0.62
HMGA1-202ENST00000347617 LINC00158P58513 81 aa11.17□□□□□ -0.62
HMGA1-202ENST00000347617 KRTAP10-3P60369 221 aa11.17□□□□□ -0.62
HMGA1-202ENST00000347617 LINC00167Q96N53 147 aa11.17□□□□□ -0.62
HMGA1-202ENST00000347617 NSD1Q96L73 2696 aaPredicted RBP11.16□□□□□ -0.62
HMGA1-202ENST00000347617 PRM2P04554 102 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 HIVEP1P15822 2718 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 IGKV3D-7A0A0C4DH55 119 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 TRBV10-3A0A0K0K1G6 114 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 LECT2O14960 151 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 NDUFC2O95298 119 aa11.16□□□□□ -0.62
HMGA1-202ENST00000347617 BCE1O60756 84 aa11.15□□□□□ -0.62
HMGA1-202ENST00000347617 ODF3L2Q3SX64 289 aa11.15□□□□□ -0.62
HMGA1-202ENST00000347617 TRBV6-4A0A1B0GX49 114 aa11.14□□□□□ -0.63
HMGA1-202ENST00000347617 CYSRT1A8MQ03 144 aa11.14□□□□□ -0.63
HMGA1-202ENST00000347617 LINC01561Q8N1V8 128 aa11.14□□□□□ -0.63
HMGA1-202ENST00000347617 SORL1Q92673 2214 aa11.14□□□□□ -0.63
HMGA1-202ENST00000347617 FN1P02751 2386 aaKnown RBP11.14□□□□□ -0.63
HMGA1-202ENST00000347617 LINC00482Q8N8I6 264 aa11.13□□□□□ -0.63
HMGA1-202ENST00000347617 A0A087WZ39 114 aa11.12□□□□□ -0.63
HMGA1-202ENST00000347617 STHQ8IWL8 128 aa11.12□□□□□ -0.63
HMGA1-202ENST00000347617 C1orf158Q8N1D5 194 aa11.12□□□□□ -0.63
HMGA1-202ENST00000347617 CUBNO60494 3623 aa11.12□□□□□ -0.63
HMGA1-202ENST00000347617 TOMM7Q9P0U1 55 aa11.11□□□□□ -0.63
HMGA1-202ENST00000347617 IGHV3OR16-9A0A0B4J2B5 98 aa11.11□□□□□ -0.63
HMGA1-202ENST00000347617 PAX4O43316 350 aa11.11□□□□□ -0.63
HMGA1-202ENST00000347617 LYPD5Q6UWN5 251 aa11.11□□□□□ -0.63
HMGA1-202ENST00000347617 XCL2Q9UBD3 114 aa11.11□□□□□ -0.63
HMGA1-202ENST00000347617 TMEM256-PLSCR3K7ERE1 68 aa11.1□□□□□ -0.63
HMGA1-202ENST00000347617 NCR3O14931 201 aa11.1□□□□□ -0.63
HMGA1-202ENST00000347617 C9orf129Q5T035 196 aaKnown RBP11.1□□□□□ -0.63
HMGA1-202ENST00000347617 Q6ZTI0 123 aa11.08□□□□□ -0.64
HMGA1-202ENST00000347617 C19orf73Q9NVV2 129 aa11.08□□□□□ -0.64
HMGA1-202ENST00000347617 C2CD3Q4AC94 2353 aa11.08□□□□□ -0.64
HMGA1-202ENST00000347617 SETD2Q9BYW2 2564 aaPredicted RBP11.08□□□□□ -0.64
HMGA1-202ENST00000347617 WNK1Q9H4A3 2382 aa11.07□□□□□ -0.64
HMGA1-202ENST00000347617 C16orf74Q96GX8 76 aa11.07□□□□□ -0.64
HMGA1-202ENST00000347617 A0A087WVE0 104 aa11.06□□□□□ -0.64
HMGA1-202ENST00000347617 SS18Q15532 418 aa11.05□□□□□ -0.64
HMGA1-202ENST00000347617 C9orf66Q5T8R8 295 aa11.05□□□□□ -0.64
HMGA1-202ENST00000347617 UBL5Q9BZL1 73 aa11.05□□□□□ -0.64
HMGA1-202ENST00000347617 CYSTM1Q9H1C7 97 aa11.05□□□□□ -0.64
HMGA1-202ENST00000347617 GHRHP01286 108 aa11.05□□□□□ -0.64
HMGA1-202ENST00000347617 TRBV6-8A0A0A6YYG3 113 aa11.04□□□□□ -0.64
HMGA1-202ENST00000347617 Q8IZM0 81 aa11.04□□□□□ -0.64
HMGA1-202ENST00000347617 Q8N814 137 aa11.04□□□□□ -0.64
HMGA1-202ENST00000347617 KIR2DL5BQ8NHK3 375 aa11.04□□□□□ -0.64
HMGA1-202ENST00000347617 H3BQ85 93 aa11.03□□□□□ -0.64
HMGA1-202ENST00000347617 PFN2P35080 140 aa11.03□□□□□ -0.64
HMGA1-202ENST00000347617 C6orf226Q5I0X4 101 aa11.03□□□□□ -0.64
HMGA1-202ENST00000347617 WFDC9Q8NEX5 89 aa11.03□□□□□ -0.64
HMGA1-202ENST00000347617 COX17Q14061 63 aa11.01□□□□□ -0.65
HMGA1-202ENST00000347617 NOP10Q9NPE3 64 aaKnown RBP11.01□□□□□ -0.65
HMGA1-202ENST00000347617 F8P00451 2351 aa11.01□□□□□ -0.65
HMGA1-202ENST00000347617 TRGV2A0A075B6R0 118 aa11□□□□□ -0.65
HMGA1-202ENST00000347617 SLPIP03973 132 aa11□□□□□ -0.65
HMGA1-202ENST00000347617 DSCR8Q96T75 97 aa11□□□□□ -0.65
HMGA1-202ENST00000347617 TRGV4A0A0C4DH28 118 aa11□□□□□ -0.65
HMGA1-202ENST00000347617 LINC00959A0A1B0GUT2 108 aa11□□□□□ -0.65
HMGA1-202ENST00000347617 IGLV4-60A0A075B6I1 120 aa10.99□□□□□ -0.65
HMGA1-202ENST00000347617 TRAV7A0A075B6U4 112 aa10.99□□□□□ -0.65
HMGA1-202ENST00000347617 GIG44P09565 113 aaPredicted RBP10.98□□□□□ -0.65
HMGA1-202ENST00000347617 FHL2Q14192 279 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 MUC7Q8TAX7 377 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 LOC110117498A0A087WWA1 95 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 FAM236DA0A1B0GTK5 79 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 FAM236CP0DP71 79 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 PDE6GP18545 87 aa10.98□□□□□ -0.65
HMGA1-202ENST00000347617 IGKV3OR2-268A0A0C4DH90 116 aa10.97□□□□□ -0.65
HMGA1-202ENST00000347617 Q5XG85 94 aa10.97□□□□□ -0.65
HMGA1-202ENST00000347617 CSNK1G2-AS1Q8NCQ2 148 aa10.97□□□□□ -0.65
HMGA1-202ENST00000347617 SERP1Q9Y6X1 66 aa10.97□□□□□ -0.65
HMGA1-202ENST00000347617 A0A1B0GUV1 79 aa10.96□□□□□ -0.65
HMGA1-202ENST00000347617 EPM2AB3EWF7 344 aa10.96□□□□□ -0.65
HMGA1-202ENST00000347617 OXTP01178 125 aa10.96□□□□□ -0.65
HMGA1-202ENST00000347617 MRAPQ8TCY5 172 aa10.96□□□□□ -0.65
HMGA1-202ENST00000347617 PLAC8L1A1L4L8 177 aa10.95□□□□□ -0.66
HMGA1-202ENST00000347617 XCL1P47992 114 aa10.95□□□□□ -0.66
HMGA1-202ENST00000347617 NANOS2P60321 138 aaKnown RBP10.95□□□□□ -0.66
HMGA1-202ENST00000347617 ENHOQ6UWT2 76 aa10.95□□□□□ -0.66
HMGA1-202ENST00000347617 TRAV23DV6A0A075B6W5 121 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms