RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 A0A087WVE0 104 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 A0A087WYN8 130 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 IGKV2-29A2NJV5 120 aaPredicted RBP4.73□□□□□ -1.65
USP28-207ENST00000538475 A6NDX4 124 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 DEFB1P60022 68 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 LINC00336Q6ZUF6 198 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 MIR7-3HGQ8N6C7 128 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.73□□□□□ -1.65
USP28-207ENST00000538475 C1orf43Q9BWL3 253 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 C16orf95Q9H693 158 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 V9GYY9 64 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 SPTBN1Q01082 2364 aaKnown RBP4.73□□□□□ -1.65
USP28-207ENST00000538475 CCL18P55774 89 aa4.72□□□□□ -1.65
USP28-207ENST00000538475 SS18Q15532 418 aa4.72□□□□□ -1.65
USP28-207ENST00000538475 SPINK13Q1W4C9 94 aa4.72□□□□□ -1.65
USP28-207ENST00000538475 DEFB104AQ8WTQ1 72 aa4.72□□□□□ -1.65
USP28-207ENST00000538475 PRO3102Q9H379 93 aa4.72□□□□□ -1.65
USP28-207ENST00000538475 MAP1BP46821 2468 aaKnown RBP4.71□□□□□ -1.65
USP28-207ENST00000538475 TRAV23DV6A0A075B6W5 121 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 NCR3O14931 201 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 LMO4P61968 165 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 COX17Q14061 63 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 RNASE13Q5GAN3 156 aaKnown RBP4.71□□□□□ -1.66
USP28-207ENST00000538475 C9orf66Q5T8R8 295 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 Q8N814 137 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 ZZEF1O43149 2961 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 ACACAQ13085 2346 aa4.71□□□□□ -1.66
USP28-207ENST00000538475 SORL1Q92673 2214 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 COL6A3P12111 3177 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 A0A087WZ39 114 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 HOXD3P31249 432 aaPredicted RBP4.7□□□□□ -1.66
USP28-207ENST00000538475 LINC00158P58513 81 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 C1orf195Q5TG92 126 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 ENHOQ6UWT2 76 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 C1orf158Q8N1D5 194 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 C6orf223Q8N319 242 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 C11orf72Q8NBR9 251 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 LINC01560Q8TB33 94 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 DYNLRB2Q8TF09 96 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 FRYLO94915 3013 aa4.7□□□□□ -1.66
USP28-207ENST00000538475 TRBV7-6A0A0J9YX20 115 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 UBE2L6O14933 153 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 INSP01308 110 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 IGHV3-11P01762 117 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 SEC61GP60059 68 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 RBM3P98179 157 aaKnown RBP4.69□□□□□ -1.66
USP28-207ENST00000538475 C9orf129Q5T035 196 aaKnown RBP4.69□□□□□ -1.66
USP28-207ENST00000538475 Q6ZQT0 140 aa4.69□□□□□ -1.66
USP28-207ENST00000538475 FP248Q71RG6 208 aaPredicted RBP4.69□□□□□ -1.66
USP28-207ENST00000538475 EP300Q09472 2414 aaPredicted RBP4.69□□□□□ -1.66
USP28-207ENST00000538475 IGKV3-7A0A075B6H7 116 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 IGHV3OR16-9A0A0B4J2B5 98 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 A0A0U1RRA0 63 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 RPL35AP18077 110 aaKnown RBP4.68□□□□□ -1.66
USP28-207ENST00000538475 PROK1P58294 105 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 FAM19A1Q7Z5A9 133 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 NCOR1O75376 2440 aa4.68□□□□□ -1.66
USP28-207ENST00000538475 IGHV3-73A0A0B4J1V6 119 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 IGHV3-38A0A0C4DH36 116 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 F8WEM9 126 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 IGHV4-59P01825 116 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 MIFP14174 115 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 LINC01547P58512 204 aaPredicted RBP4.67□□□□□ -1.66
USP28-207ENST00000538475 HILS1P60008 231 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 Q8IZM0 81 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 DEFB124Q8NES8 71 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 CFAP54Q96N23 3096 aa4.67□□□□□ -1.66
USP28-207ENST00000538475 TRBV7-4A0A0J9YYF1 115 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 A0A1B0GW54 56 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 IGKV3-20P01619 116 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 CMC4P56277 68 aaPredicted RBP4.66□□□□□ -1.66
USP28-207ENST00000538475 DEFB114Q30KQ6 69 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 NTM-AS1Q6ZSK4 140 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 UBE2E2Q96LR5 201 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 VCANP13611 3396 aa4.66□□□□□ -1.66
USP28-207ENST00000538475 PLAC8L1A1L4L8 177 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 CCL21O00585 134 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 LY6HO94772 140 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 LINC00575Q6W349 94 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 Q6ZVQ6 151 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 PRR15Q8IV56 129 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 TRIOBPQ9H2D6 2365 aa4.65□□□□□ -1.67
USP28-207ENST00000538475 ABCA2Q9BZC7 2435 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 VPS13AQ96RL7 3174 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 IGHV4-28A0A0C4DH34 117 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 H3BUX3 64 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 NBL1P41271 181 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 ESRGQ1W209 222 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 C11orf68Q9H3H3 251 aaKnown RBP4.64□□□□□ -1.67
USP28-207ENST00000538475 ESM1Q9NQ30 184 aa4.64□□□□□ -1.67
USP28-207ENST00000538475 OTOGLQ3ZCN5 2332 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 IGHV4-30-2A0A087WSY4 118 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 CCL24O00175 119 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 IGHV4-31P0DP07 118 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 DEFB131AP59861 70 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 NANOS2P60321 138 aaKnown RBP4.63□□□□□ -1.67
USP28-207ENST00000538475 NREPQ16612 68 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 C6orf226Q5I0X4 101 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 KHDC1LQ5JSQ8 128 aa4.63□□□□□ -1.67
USP28-207ENST00000538475 Q6ZRU5 148 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms