RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 LINC01558Q9Y6Z2 57 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 BTAF1O14981 1849 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MAP2P11137 1827 aaKnown RBP0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CEP192Q8TEP8 1941 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYH4Q9Y623 1939 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 CASP8AP2Q9UKL3 1982 aa0.28□□□□□ -2.36
RNU4-54P-201ENST00000516428 MICAL3Q7RTP6 2002 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 CD163L1Q9NR16 1453 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 FREM3P0C091 2139 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 MED12LQ86YW9 2145 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 LMTK2Q8IWU2 1503 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 ASXL1Q8IXJ9 1541 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 SEC16AO15027 2179 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 PLXNC1O60486 1568 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 CDC42BPGQ6DT37 1551 aa0.28□□□□□ -2.37
RNU4-54P-201ENST00000516428 PAPPAQ13219 1627 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ABCA6Q8N139 1617 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 E9PCH4 1651 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A0G2JMZ2 1700 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 XRN1Q8IZH2 1706 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ARFGEF2Q9Y6D5 1785 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 COL5A1P20908 1838 aaPredicted RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 LAMA4Q16363 1823 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 TNRC6BQ9UPQ9 1833 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ARFGEF1Q9Y6D6 1849 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PDCD11Q14690 1871 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 EXPH5Q8NEV8 1989 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 CR1P17927 2039 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 CHD3Q12873 2000 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 MYO18AQ92614 2054 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 MYOFQ9NZM1 2061 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A087WVE0 104 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 TRGV1A0A0A0MS02 117 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 TRBV7-4A0A0J9YYF1 115 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 TRBV30A0A0K0K1B3 111 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 CTXND1A0A1B0GTU2 59 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A1B0GUT8 65 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 C7orf77A4D0Y5 90 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PCNX2A6NKB5 2137 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 IQCF6A8MYZ5 107 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 D6R8Y8 96 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 H0Y9P7 68 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PIN1P1O15428 100 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 NDUFB1O75438 58 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 LEPROTL1O95214 131 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 COX8AP10176 69 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ACYP2P14621 99 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 HMGA1P17096 107 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 GCHFRP30047 84 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ZNF137PP52743 207 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 FXYD6P3P58550 94 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 FXYD4P59646 89 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPINK13Q1W4C9 94 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP13-4Q3LI77 160 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 Q6JHZ5 121 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SFTA2Q6UW10 78 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 C6orf201Q7Z4U5 140 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 MUSTN1Q8IVN3 82 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 DEFB119Q8N690 84 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SMIM11BQ8TCY0 68 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 LINC00208Q96KT6 92 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 OBSCN-AS1Q96MR7 158 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 Q96NJ1 140 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPRR4Q96PI1 79 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 WFDC6Q9BQY6 131 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PRR15LQ9BU68 103 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PSENENQ9NZ42 101 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PLAC8Q9NZF1 115 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 UBE2D4Q9Y2X8 147 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 MYO9BQ13459 2157 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 ANKRD50Q9ULJ7 1429 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 LRRC7Q96NW7 1537 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SYCP2Q9BX26 1530 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SAMD9Q5K651 1589 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 VWDEQ8N2E2 1590 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 KIAA0556O60303 1618 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 NHSL1Q5SYE7 1610 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 USP32Q8NFA0 1604 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 RNF17Q9BXT8 1623 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 WIZO95785 1651 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 COL4A1P02462 1669 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 LRRC37AA6NMS7 1700 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 PARP4Q9UKK3 1724 aaKnown RBP0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 GBF1Q92538 1859 aa0.27□□□□□ -2.37
RNU4-54P-201ENST00000516428 SHROOM3Q8TF72 1996 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 CACNA1DQ01668 2161 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A087WXM4 84 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 A0A096LNT2 108 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 TRBV6-1A0A0K0K1D8 114 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 C10orf142B7Z368 130 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 M0R3E3 92 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 NCR3O14931 201 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 SFTA3P0C7M3 94 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 IFI27P40305 119 aaPredicted RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 SPINT3P49223 89 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 KRTAP10-10P60014 251 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 RPL37P61927 97 aaKnown RBP0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 GNGT1P63211 74 aa0.26□□□□□ -2.37
RNU4-54P-201ENST00000516428 PCOTHQ58A44 107 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms