RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 ROBO1Q9Y6N7 1651 aa-0.4□□□□□ -2.47
LSM6-205ENST00000507449 DOCK2Q92608 1830 aa-0.41□□□□□ -2.47
LSM6-205ENST00000507449 STAB2Q8WWQ8 2551 aa-0.41□□□□□ -2.47
LSM6-205ENST00000507449 FXYD6-FXYD2A0A087WZ82 144 aa-0.41□□□□□ -2.48
LSM6-205ENST00000507449 SFT2D2O95562 160 aa-0.41□□□□□ -2.48
LSM6-205ENST00000507449 APOC3P02656 99 aa-0.41□□□□□ -2.48
LSM6-205ENST00000507449 EP300Q09472 2414 aaPredicted RBP-0.42□□□□□ -2.48
LSM6-205ENST00000507449 SHROOM2Q13796 1616 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 PLCE1Q9P212 2302 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 DCDP81605 110 aaKnown RBP-0.42□□□□□ -2.48
LSM6-205ENST00000507449 RPL13AP3Q6NVV1 102 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 MRPL54Q6P161 138 aaKnown RBP-0.42□□□□□ -2.48
LSM6-205ENST00000507449 NSD3Q9BZ95 1437 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 ZFHX3Q15911 3703 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 PIEZO2Q9H5I5 2752 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 PAPPAQ13219 1627 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 MYH7P12883 1935 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 USF3Q68DE3 2245 aa-0.42□□□□□ -2.48
LSM6-205ENST00000507449 DCHS2Q6V1P9 2916 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 CELSR3Q9NYQ7 3312 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 A0A1B0GV90 55 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 CHKB-CPT1BH3BT56 60 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 TNFP01375 233 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 C9orf153Q5TBE3 101 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 DPH3P1Q9H4G8 78 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 CDC42SE2Q9NRR3 84 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 DOPEY2Q9Y3R5 2298 aa-0.43□□□□□ -2.48
LSM6-205ENST00000507449 KTN1Q86UP2 1357 aaKnown RBP-0.44□□□□□ -2.48
LSM6-205ENST00000507449 HECTD4Q9Y4D8 3996 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 NIPBLQ6KC79 2804 aaeCLIP-0.44□□□□□ -2.48
LSM6-205ENST00000507449 LOC285095A0A1B0GVY8 99 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 PIGYQ3MUY2 71 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 TGP01266 2768 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 MYOM1P52179 1685 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 NBEAL1Q6ZS30 2694 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 APC2O95996 2303 aa-0.44□□□□□ -2.48
LSM6-205ENST00000507449 ARHGEF5Q12774 1597 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 SBF2Q86WG5 1849 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 IGLC1P0CG04 106 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 MYOZ3Q8TDC0 251 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 SPRR4Q96PI1 79 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 USP9YO00507 2555 aaPredicted RBP-0.45□□□□□ -2.48
LSM6-205ENST00000507449 PSME4Q14997 1843 aa-0.45□□□□□ -2.48
LSM6-205ENST00000507449 USP9XQ93008 2570 aaPredicted RBP-0.46□□□□□ -2.48
LSM6-205ENST00000507449 ITPR3Q14573 2671 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 UBE2L5PA0A1B0GUS4 154 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 DLEU1O43261 78 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 SPRR1BP22528 89 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 UBE2L3P68036 154 aaKnown RBP-0.46□□□□□ -2.48
LSM6-205ENST00000507449 KRTAP20-1Q3LI63 56 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 DEFB123Q8N688 67 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 NXT2Q9NPJ8 142 aaKnown RBP-0.46□□□□□ -2.48
LSM6-205ENST00000507449 COL12A1Q99715 3063 aa-0.46□□□□□ -2.48
LSM6-205ENST00000507449 SMG6Q86US8 1419 aaKnown RBP-0.47□□□□□ -2.48
LSM6-205ENST00000507449 SHANK2Q9UPX8 1470 aa-0.47□□□□□ -2.48
LSM6-205ENST00000507449 MYO7BQ6PIF6 2116 aa-0.47□□□□□ -2.48
LSM6-205ENST00000507449 PRKDCP78527 4128 aaKnown RBP-0.47□□□□□ -2.48
LSM6-205ENST00000507449 EFCAB10A6NFE3 127 aa-0.47□□□□□ -2.48
LSM6-205ENST00000507449 SNAPC5O75971 98 aa-0.47□□□□□ -2.48
LSM6-205ENST00000507449 TMEM263Q8WUH6 116 aaKnown RBP-0.47□□□□□ -2.48
LSM6-205ENST00000507449 COL6A5A8TX70 2615 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 HECTD1Q9ULT8 2610 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 HMGXB3Q12766 1538 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 GVINP1Q7Z2Y8 2422 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 RAPGEF6Q8TEU7 1601 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 K7EQZ3 153 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 MGPP08493 103 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 C10orf113Q5VZT2 155 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 FAM223AQ8IWN6 122 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 MYOM2P54296 1465 aa-0.48□□□□□ -2.49
LSM6-205ENST00000507449 RIF1Q5UIP0 2472 aaKnown RBP-0.48□□□□□ -2.49
LSM6-205ENST00000507449 FASNP49327 2511 aaKnown RBP-0.48□□□□□ -2.49
LSM6-205ENST00000507449 NBEAL2Q6ZNJ1 2754 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 COX6B1P14854 86 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 GNG11P61952 73 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 FAM167A-AS1Q96KT0 104 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 UQCR10Q9UDW1 63 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 IER3IP1Q9Y5U9 82 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 ARL2-SNX15V9GYD0 113 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 MXRA5Q9NR99 2828 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 MGAM2Q2M2H8 2515 aa-0.49□□□□□ -2.49
LSM6-205ENST00000507449 FLNBO75369 2602 aaKnown RBP-0.5□□□□□ -2.49
LSM6-205ENST00000507449 SPTBN1Q01082 2364 aaKnown RBP-0.5□□□□□ -2.49
LSM6-205ENST00000507449 ATRQ13535 2644 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 TULP4Q9NRJ4 1543 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 ARHGEF12Q9NZN5 1544 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 COL6A3P12111 3177 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 TET3O43151 1660 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 CUL7Q14999 1698 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 NALCNQ8IZF0 1738 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 MUC17Q685J3 4493 aa-0.5□□□□□ -2.49
LSM6-205ENST00000507449 WDR87Q6ZQQ6 2873 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 PRRC2CQ9Y520 2896 aaKnown RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 FLGP20930 4061 aaPredicted RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 FAM24AA6NFZ4 105 aa-0.51□□□□□ -2.49
LSM6-205ENST00000507449 POLA1P09884 1462 aaPredicted RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 KDM5AP29375 1690 aaKnown RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 MAP1AP78559 2803 aaPredicted RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 PLECQ15149 4684 aaKnown RBP-0.51□□□□□ -2.49
LSM6-205ENST00000507449 MYO18BQ8IUG5 2567 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms