RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SDK1Q7Z5N4 2213 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 A0A0G2JQZ4 141 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 LEPROTL1O95214 131 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 PPP1R17O96001 155 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 IGHV3-30P01768 117 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 IGHV3-30-5P0DP03 117 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 SPAG11BQ08648 103 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 GDF5OSQ5U4N7 250 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 SPAG11AQ6PDA7 123 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 SPINT4Q6UDR6 99 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 Q6ZTI0 123 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 KRTAP11-1Q8IUC1 163 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 SPACA4Q8TDM5 124 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 LENEPQ9Y5L5 61 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 SNURFQ9Y675 71 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 TRPM2O94759 1503 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 ABCC6O95255 1503 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 AGLP35573 1532 aa2.32□□□□□ -2.04
VPS41-212ENST00000482217 BCORQ6W2J9 1755 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 A0A0J9YY99 117 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 IGLV3-1P01715 115 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 IFI27P40305 119 aaPredicted RBP2.31□□□□□ -2.04
VPS41-212ENST00000482217 ELOF1P60002 83 aaKnown RBP2.31□□□□□ -2.04
VPS41-212ENST00000482217 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 KRTAP4-3Q9BYR4 195 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 TTTY12Q9BZ98 90 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 ORMDL1Q9P0S3 153 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 GNG13Q9P2W3 67 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 PSORS1C2Q9UIG4 136 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 LRP6O75581 1613 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 CLTCL1P53675 1640 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 USP32Q8NFA0 1604 aa2.31□□□□□ -2.04
VPS41-212ENST00000482217 COL5A1P20908 1838 aaPredicted RBP2.31□□□□□ -2.04
VPS41-212ENST00000482217 BRWD1Q9NSI6 2320 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 IGKV3D-7A0A0C4DH55 119 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 IGKV3OR2-268A0A0C4DH90 116 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 SNRPGP15A8MWD9 76 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 M0R3E3 92 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 SAA2P0DJI9 122 aaPredicted RBP2.3□□□□□ -2.04
VPS41-212ENST00000482217 PPP1R1CQ8WVI7 109 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 NKTRP30414 1462 aaKnown RBP2.3□□□□□ -2.04
VPS41-212ENST00000482217 CICQ96RK0 1608 aaPredicted RBP2.3□□□□□ -2.04
VPS41-212ENST00000482217 NHSQ6T4R5 1651 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 ANKRD36CQ5JPF3 1778 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 SPAG17Q6Q759 2223 aa2.3□□□□□ -2.04
VPS41-212ENST00000482217 FREM1Q5H8C1 2179 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 NHSL1Q5SYE7 1610 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 A0A087WVE0 104 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 LRCOL1A6NCL2 159 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 HIGD1CA8MV81 97 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 D6R8Y8 96 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 PPYP01298 95 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 CCL3L1P16619 93 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 KRTAP12-2P59991 146 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 SSBP1Q04837 148 aaKnown RBP2.29□□□□□ -2.04
VPS41-212ENST00000482217 MUSTN1Q8IVN3 82 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 SHANK1Q9Y566 2161 aa2.29□□□□□ -2.04
VPS41-212ENST00000482217 LRRC37A3O60309 1634 aa2.28□□□□□ -2.04
VPS41-212ENST00000482217 PHRF1Q9P1Y6 1649 aaKnown RBP2.28□□□□□ -2.04
VPS41-212ENST00000482217 ADGRB2O60241 1585 aa2.28□□□□□ -2.04
VPS41-212ENST00000482217 TJP1Q07157 1748 aa2.28□□□□□ -2.05
VPS41-212ENST00000482217 C3P01024 1663 aa2.28□□□□□ -2.05
VPS41-212ENST00000482217 TRBV7-4A0A0J9YYF1 115 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 TRBV6-5A0A0K0K1A5 114 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 PDE6GP18545 87 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 DEFB134Q4QY38 66 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 ZNF563Q8TA94 476 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 COX7B2Q8TF08 81 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 NCOA6Q14686 2063 aaPredicted RBP2.27□□□□□ -2.05
VPS41-212ENST00000482217 GPR179Q6PRD1 2367 aa2.27□□□□□ -2.05
VPS41-212ENST00000482217 PAPPA2Q9BXP8 1791 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 POLR1AO95602 1720 aaPredicted RBP2.26□□□□□ -2.05
VPS41-212ENST00000482217 A0A087WTM6 91 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 TRBV6-4A0A1B0GX49 114 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 HMGA1P17096 107 aaKnown RBP2.26□□□□□ -2.05
VPS41-212ENST00000482217 CCL18P55774 89 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 LY6EQ16553 131 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 KRTAP13-3Q3SY46 172 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 Q8N9L7 120 aa2.26□□□□□ -2.05
VPS41-212ENST00000482217 IQGAP1P46940 1657 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 MED13LQ71F56 2210 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 A0A0D9SFI3 127 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 NBDYA0A0U1RRE5 68 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 F8VRH5 84 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 JMJD7-PLA2G4BH0Y9G9 81 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 IGLV3-19P01714 112 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 FAM74A4Q5TZK3 123 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 ATP5EP2Q5VTU8 51 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 PLAC8Q9NZF1 115 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 KLK9Q9UKQ9 250 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 NRAPQ86VF7 1730 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 FMN2Q9NZ56 1722 aa2.25□□□□□ -2.05
VPS41-212ENST00000482217 INTS1Q8N201 2190 aaKnown RBP2.25□□□□□ -2.05
VPS41-212ENST00000482217 NRXN3Q9Y4C0 1643 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 SLIT1O75093 1534 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 M0R135 149 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 IFI6P09912 130 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 RNASE3P12724 160 aaKnown RBP2.24□□□□□ -2.05
VPS41-212ENST00000482217 ATXN8Q156A1 80 aa2.24□□□□□ -2.05
VPS41-212ENST00000482217 NCBP2-AS2Q69YL0 99 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms