RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SMIM11BQ8TCY0 68 aa5.17□□□□□ -1.58
USP48-206ENST00000464577 C4orf3Q8WVX3 66 aa5.17□□□□□ -1.58
USP48-206ENST00000464577 IBA57-AS1B1ANH7 110 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 FSHBP01225 129 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 DEFB136Q30KP8 78 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 C18orf65Q6ZTR6 163 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 TRAV25A0A0B4J276 109 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 XCL2Q9UBD3 114 aa5.16□□□□□ -1.58
USP48-206ENST00000464577 CEP295Q9C0D2 2601 aa5.15□□□□□ -1.58
USP48-206ENST00000464577 HIVEP3Q5T1R4 2406 aa5.15□□□□□ -1.58
USP48-206ENST00000464577 SPTAN1Q13813 2472 aaKnown RBP5.15□□□□□ -1.58
USP48-206ENST00000464577 A0A096LNT2 108 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 LY6G6DO95868 133 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 CCL18P55774 89 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 TMEM258P61165 79 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 ODF3L2Q3SX64 289 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 Q6ZTI0 123 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 SERP2Q8N6R1 65 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 C14orf132Q9NPU4 83 aa5.15□□□□□ -1.59
USP48-206ENST00000464577 LINC00158P58513 81 aa5.14□□□□□ -1.59
USP48-206ENST00000464577 C9orf129Q5T035 196 aaKnown RBP5.14□□□□□ -1.59
USP48-206ENST00000464577 STHQ8IWL8 128 aa5.14□□□□□ -1.59
USP48-206ENST00000464577 LINC00846Q9NV44 126 aa5.14□□□□□ -1.59
USP48-206ENST00000464577 hADV29S1A0JD25 119 aa5.14□□□□□ -1.59
USP48-206ENST00000464577 UPK3BQ9BT76 320 aa5.14□□□□□ -1.59
USP48-206ENST00000464577 IGHV3OR16-9A0A0B4J2B5 98 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 IGKV3D-7A0A0C4DH55 119 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 LOC107984640A0A0U1RRK4 108 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 TRBV6-4A0A1B0GX49 114 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 LECT2O14960 151 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 S100A7L2Q5SY68 101 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 ATP5EP2Q5VTU8 51 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 LINC00167Q96N53 147 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 ASH1LQ9NR48 2969 aaKnown RBP5.13□□□□□ -1.59
USP48-206ENST00000464577 NBASA2RRP1 2371 aa5.13□□□□□ -1.59
USP48-206ENST00000464577 A0A087WZ39 114 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 CCKP06307 115 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 C5orf47Q569G3 176 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 KRTAP9-9Q9BYP9 154 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 ORMDL1Q9P0S3 153 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 TOMM7Q9P0U1 55 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 MUC6Q6W4X9 2439 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 SVEP1Q4LDE5 3571 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 USP17L23D6RBM5 183 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 FAM19A5Q7Z5A7 132 aaPredicted RBP5.12□□□□□ -1.59
USP48-206ENST00000464577 LINC01561Q8N1V8 128 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 OR13C6PQ8NH95 151 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 RELNP78509 3460 aa5.12□□□□□ -1.59
USP48-206ENST00000464577 SMIM9A6NGZ8 99 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 NCR3O14931 201 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 SS18Q15532 418 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 C16orf74Q96GX8 76 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 KRTAP4-12Q9BQ66 201 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 ATRXP46100 2492 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 AKAP6Q13023 2319 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.11□□□□□ -1.595e-9■■■■■ 26.8
USP48-206ENST00000464577 JMJD7-PLA2G4BH0Y9G9 81 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 PAX4O43316 350 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 C11orf44Q8N8P7 122 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 CYSTM1Q9H1C7 97 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 NOP10Q9NPE3 64 aaKnown RBP5.11□□□□□ -1.59
USP48-206ENST00000464577 SORL1Q92673 2214 aa5.11□□□□□ -1.59
USP48-206ENST00000464577 IGLV4-60A0A075B6I1 120 aa5.1□□□□□ -1.59
USP48-206ENST00000464577 TRBV6-8A0A0A6YYG3 113 aa5.1□□□□□ -1.59
USP48-206ENST00000464577 PLAC8L1A1L4L8 177 aa5.1□□□□□ -1.59
USP48-206ENST00000464577 KHDC1LQ5JSQ8 128 aa5.1□□□□□ -1.59
USP48-206ENST00000464577 DPH3Q96FX2 82 aa5.1□□□□□ -1.59
USP48-206ENST00000464577 A0A087WVE0 104 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 A0A1W2PRX2 142 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 CMC4P56277 68 aaPredicted RBP5.09□□□□□ -1.59
USP48-206ENST00000464577 IGF2RP11717 2491 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 TRGV2A0A075B6R0 118 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 TRBV10-3A0A0K0K1G6 114 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 LOC100131303A0A0U1RQF7 123 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 NDUFC2-KCTD14E9PQ53 114 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 SLPIP03973 132 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 IGHV4-31P0DP07 118 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 PFN2P35080 140 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 LYPD5Q6UWN5 251 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 TMEM86BQ8N661 226 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 ZFHX3Q15911 3703 aa5.09□□□□□ -1.59
USP48-206ENST00000464577 TRGV4A0A0C4DH28 118 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 IGKV3OR2-268A0A0C4DH90 116 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 LINC00959A0A1B0GUT2 108 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 GIG44P09565 113 aaPredicted RBP5.08□□□□□ -1.6
USP48-206ENST00000464577 Q8IZM0 81 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 TMEM256-PLSCR3K7ERE1 68 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 NDUFC2O95298 119 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 Q8N814 137 aa5.08□□□□□ -1.6
USP48-206ENST00000464577 CELSR1Q9NYQ6 3014 aa5.07□□□□□ -1.6
USP48-206ENST00000464577 BCE1O60756 84 aa5.07□□□□□ -1.6
USP48-206ENST00000464577 NANOS2P60321 138 aaKnown RBP5.07□□□□□ -1.6
USP48-206ENST00000464577 FHL2Q14192 279 aa5.07□□□□□ -1.6
USP48-206ENST00000464577 C6orf226Q5I0X4 101 aa5.07□□□□□ -1.6
USP48-206ENST00000464577 MAPK1IP1LQ8NDC0 245 aa5.06□□□□□ -1.6
USP48-206ENST00000464577 KIR2DL5BQ8NHK3 375 aa5.06□□□□□ -1.6
USP48-206ENST00000464577 GHRHP01286 108 aa5.06□□□□□ -1.6
USP48-206ENST00000464577 A0A1B0GUV1 79 aa5.05□□□□□ -1.6
USP48-206ENST00000464577 OXTP01178 125 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms