RNA–Protein interactions for RNA: ENST00000373327.4

TRAF3IP1-201, Transcript of TRAF3 interacting protein 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRAF3IP1, Length 4,279 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3IP1-201ENST00000373327 MIAQ16674 131 aa12.79□□□□□ -0.36
TRAF3IP1-201ENST00000373327 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
TRAF3IP1-201ENST00000373327 TRAV26-1A0A087WT03 109 aa12.78□□□□□ -0.36
TRAF3IP1-201ENST00000373327 TRAV4A0A0B4J268 109 aa12.78□□□□□ -0.36
TRAF3IP1-201ENST00000373327 COX7B2Q8TF08 81 aa12.78□□□□□ -0.36
TRAF3IP1-201ENST00000373327 ATP5G1P05496 136 aa12.77□□□□□ -0.37
TRAF3IP1-201ENST00000373327 FAM222AQ5U5X8 452 aa12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LRRC75A-AS1Q8N1F1 130 aa12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LINC00526Q96FQ7 95 aa12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 BAALC-AS2P0C853 105 aa12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 RPL32P62910 135 aaKnown RBP12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 CHCHD7Q9BUK0 85 aa12.76□□□□□ -0.37
TRAF3IP1-201ENST00000373327 DEFB121Q5J5C9 76 aa12.75□□□□□ -0.37
TRAF3IP1-201ENST00000373327 UNC79Q9P2D8 2635 aa12.75□□□□□ -0.37
TRAF3IP1-201ENST00000373327 UBE2D1P51668 147 aa12.74□□□□□ -0.37
TRAF3IP1-201ENST00000373327 TRBV10-1A0A0K0K1A3 114 aa12.73□□□□□ -0.37
TRAF3IP1-201ENST00000373327 BRI3O95415 125 aa12.73□□□□□ -0.37
TRAF3IP1-201ENST00000373327 C3orf56Q8N813 242 aa12.73□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LINC00308Q8TCZ7 52 aa12.73□□□□□ -0.37
TRAF3IP1-201ENST00000373327 PYGO1Q9Y3Y4 419 aa12.73□□□□□ -0.37
TRAF3IP1-201ENST00000373327 MRPS36P82909 103 aaKnown RBP12.72□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LINC00242Q5T6M2 205 aa12.72□□□□□ -0.37
TRAF3IP1-201ENST00000373327 NOTCH1P46531 2555 aa12.72□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LINC01546A6NGU7 62 aa12.72□□□□□ -0.37
TRAF3IP1-201ENST00000373327 IFITM1P13164 125 aa12.72□□□□□ -0.37
TRAF3IP1-201ENST00000373327 HIST1H4AP62805 103 aaKnown RBP12.71□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LINC00269Q8N2A0 174 aa12.71□□□□□ -0.37
TRAF3IP1-201ENST00000373327 LAMTOR3Q9UHA4 124 aa12.71□□□□□ -0.38
TRAF3IP1-201ENST00000373327 KLK12Q9UKR0 248 aa12.71□□□□□ -0.38
TRAF3IP1-201ENST00000373327 MRAPQ8TCY5 172 aa12.71□□□□□ -0.38
TRAF3IP1-201ENST00000373327 MXRA5Q9NR99 2828 aa12.7□□□□□ -0.38
TRAF3IP1-201ENST00000373327 A0A0B4J2C4 111 aa12.7□□□□□ -0.38
TRAF3IP1-201ENST00000373327 EDA2RQ9HAV5 297 aa12.7□□□□□ -0.38
TRAF3IP1-201ENST00000373327 TRBV10-2A0A0K0K1G8 114 aa12.69□□□□□ -0.38
TRAF3IP1-201ENST00000373327 LY6G6DO95868 133 aa12.69□□□□□ -0.38
TRAF3IP1-201ENST00000373327 FAM110AQ9BQ89 295 aa12.69□□□□□ -0.38
TRAF3IP1-201ENST00000373327 LECT2O14960 151 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 APOC4P55056 127 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 TRAV13-2A0A0B4J235 113 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 NBEAL1Q6ZS30 2694 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 IGLV4-60A0A075B6I1 120 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 SLPIP03973 132 aa12.68□□□□□ -0.38
TRAF3IP1-201ENST00000373327 TRBV6-8A0A0A6YYG3 113 aa12.67□□□□□ -0.38
TRAF3IP1-201ENST00000373327 C11orf72Q8NBR9 251 aa12.67□□□□□ -0.38
TRAF3IP1-201ENST00000373327 PRO0255Q9UI72 69 aa12.66□□□□□ -0.38
TRAF3IP1-201ENST00000373327 HERV-K104P63124 156 aa12.66□□□□□ -0.38
TRAF3IP1-201ENST00000373327 NCR3O14931 201 aa12.66□□□□□ -0.38
TRAF3IP1-201ENST00000373327 XGP55808 180 aa12.66□□□□□ -0.38
TRAF3IP1-201ENST00000373327 KLK9Q2XQG4 91 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 CRYBA4P53673 196 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 C9orf66Q5T8R8 295 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 B5MCH6 92 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 AMELXQ99217 191 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 CDC42SE2Q9NRR3 84 aa12.65□□□□□ -0.38
TRAF3IP1-201ENST00000373327 NDUFA1O15239 70 aa12.65□□□□□ -0.39
TRAF3IP1-201ENST00000373327 UBE2D3P61077 147 aa12.65□□□□□ -0.39
TRAF3IP1-201ENST00000373327 UBE2D2P62837 147 aa12.65□□□□□ -0.39
TRAF3IP1-201ENST00000373327 COX7A2LO14548 114 aa12.64□□□□□ -0.39
TRAF3IP1-201ENST00000373327 ZNF561-AS1K7EIQ3 104 aa12.64□□□□□ -0.39
TRAF3IP1-201ENST00000373327 APCP25054 2843 aa12.63□□□□□ -0.39
TRAF3IP1-201ENST00000373327 TIRAPP58753 221 aa12.63□□□□□ -0.39
TRAF3IP1-201ENST00000373327 SMIM1B2RUZ4 78 aa12.62□□□□□ -0.39
TRAF3IP1-201ENST00000373327 NTM-AS1Q6ZSK4 140 aa12.62□□□□□ -0.39
TRAF3IP1-201ENST00000373327 SMCPP49901 116 aaPredicted RBP12.61□□□□□ -0.39
TRAF3IP1-201ENST00000373327 HILS1P60008 231 aa12.61□□□□□ -0.39
TRAF3IP1-201ENST00000373327 IGKV3D-7A0A0C4DH55 119 aa12.61□□□□□ -0.39
TRAF3IP1-201ENST00000373327 SPART-AS1P0CW21 52 aa12.61□□□□□ -0.39
TRAF3IP1-201ENST00000373327 DPH3Q96FX2 82 aa12.6□□□□□ -0.39
TRAF3IP1-201ENST00000373327 TRBV6-4A0A1B0GX49 114 aa12.6□□□□□ -0.39
TRAF3IP1-201ENST00000373327 IGLV1-51P01701 117 aa12.6□□□□□ -0.39
TRAF3IP1-201ENST00000373327 A0A096LNT2 108 aa12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 PRR3P79522 188 aaKnown RBP12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 HIGD2BQ4VC39 106 aa12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 C14orf132Q9NPU4 83 aa12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 TRBV30A0A0K0K1B3 111 aa12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 IGKV2D-24A0A075B6R9 120 aa12.59□□□□□ -0.39
TRAF3IP1-201ENST00000373327 RNF183Q96D59 192 aa12.58□□□□□ -0.4
TRAF3IP1-201ENST00000373327 H7C423 109 aa12.58□□□□□ -0.4
TRAF3IP1-201ENST00000373327 MRPL23Q16540 153 aaKnown RBP12.58□□□□□ -0.4
TRAF3IP1-201ENST00000373327 EIF4EBP3O60516 100 aaPredicted RBP12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 C9orf116Q5BN46 136 aaPredicted RBP12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 SS18L2Q9UHA2 77 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 BEAN1Q3B7T3 259 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 REG3AQ06141 175 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 CHCHD10Q8WYQ3 142 aaPredicted RBP12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 XAGE1AQ9HD64 81 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 STAB1Q9NY15 2570 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 PRB2P02812 416 aaPredicted RBP12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 SPAG11BQ08648 103 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 OXLD1Q5BKU9 147 aa12.57□□□□□ -0.4
TRAF3IP1-201ENST00000373327 IGHV4-28A0A0C4DH34 117 aa12.56□□□□□ -0.4
TRAF3IP1-201ENST00000373327 INAFM2P0DMQ5 153 aa12.56□□□□□ -0.4
TRAF3IP1-201ENST00000373327 H3BT86 120 aa12.55□□□□□ -0.4
TRAF3IP1-201ENST00000373327 SPANXDQ9BXN6 97 aa12.55□□□□□ -0.4
TRAF3IP1-201ENST00000373327 SPANXCQ9NY87 97 aa12.55□□□□□ -0.4
TRAF3IP1-201ENST00000373327 LINC00959A0A1B0GUT2 108 aa12.55□□□□□ -0.4
TRAF3IP1-201ENST00000373327 COL6A5A8TX70 2615 aa12.54□□□□□ -0.4
TRAF3IP1-201ENST00000373327 RPL18AQ02543 176 aaKnown RBP12.54□□□□□ -0.4
TRAF3IP1-201ENST00000373327 FHL2Q14192 279 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms