RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 RBMY1DP0C7P1 496 aaKnown RBP12.77□□□□□ -0.37
NUP54-205ENST00000507257 HOXD3P31249 432 aaPredicted RBP12.77□□□□□ -0.37
NUP54-205ENST00000507257 UBE2E2Q96LR5 201 aa12.77□□□□□ -0.37
NUP54-205ENST00000507257 DEFB131AP59861 70 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 C10orf99Q6UWK7 81 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 OVOL2Q9BRP0 275 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 ZFHX3Q15911 3703 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 RELNP78509 3460 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 NDUFA7O95182 113 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 HTN1P15515 57 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 RPL28P46779 137 aaKnown RBP12.76□□□□□ -0.37
NUP54-205ENST00000507257 HIST2H2BCQ6DN03 193 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 HIST2H2BDQ6DRA6 164 aa12.76□□□□□ -0.37
NUP54-205ENST00000507257 NBASA2RRP1 2371 aa12.75□□□□□ -0.37
NUP54-205ENST00000507257 IGHV3-38A0A0C4DH36 116 aa12.75□□□□□ -0.37
NUP54-205ENST00000507257 C9orf153Q5TBE3 101 aa12.75□□□□□ -0.37
NUP54-205ENST00000507257 HIVEP3Q5T1R4 2406 aa12.75□□□□□ -0.37
NUP54-205ENST00000507257 C19orf84I3L1E1 186 aa12.74□□□□□ -0.37
NUP54-205ENST00000507257 HIST1H4AP62805 103 aaKnown RBP12.74□□□□□ -0.37
NUP54-205ENST00000507257 PRIMA1Q86XR5 153 aa12.74□□□□□ -0.37
NUP54-205ENST00000507257 TRAV13-2A0A0B4J235 113 aa12.74□□□□□ -0.37
NUP54-205ENST00000507257 F5H768 121 aa12.74□□□□□ -0.37
NUP54-205ENST00000507257 B4DSR2 109 aa12.73□□□□□ -0.37
NUP54-205ENST00000507257 VPREB3Q9UKI3 123 aa12.73□□□□□ -0.37
NUP54-205ENST00000507257 AVPP01185 164 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 IGHV4-59P01825 116 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 IGHV4-30-2A0A087WSY4 118 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 TRBV10-1A0A0K0K1A3 114 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 COX7CP15954 63 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 FAM218AQ96MZ4 157 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 CCL19Q99731 98 aa12.72□□□□□ -0.37
NUP54-205ENST00000507257 MALP21145 153 aa12.71□□□□□ -0.37
NUP54-205ENST00000507257 CEP295Q9C0D2 2601 aa12.7□□□□□ -0.38
NUP54-205ENST00000507257 INSP01308 110 aa12.7□□□□□ -0.38
NUP54-205ENST00000507257 A0A1B0GX51 115 aa12.7□□□□□ -0.38
NUP54-205ENST00000507257 DEFB112Q30KQ8 113 aa12.7□□□□□ -0.38
NUP54-205ENST00000507257 SORL1Q92673 2214 aa12.7□□□□□ -0.38
NUP54-205ENST00000507257 ATOX1O00244 68 aa12.69□□□□□ -0.38
NUP54-205ENST00000507257 CRYGAP11844 174 aa12.69□□□□□ -0.38
NUP54-205ENST00000507257 IL17DQ8TAD2 202 aa12.69□□□□□ -0.38
NUP54-205ENST00000507257 AKAP6Q13023 2319 aa12.69□□□□□ -0.38
NUP54-205ENST00000507257 PRM2P04554 102 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 NRGNQ92686 78 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 CDC42SE2Q9NRR3 84 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 LINC00694P0DN24 101 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 ATP5J2P56134 94 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 C2orf48Q96LS8 159 aa12.68□□□□□ -0.38
NUP54-205ENST00000507257 A0A0U1RRA0 63 aa12.67□□□□□ -0.38
NUP54-205ENST00000507257 CRPP02741 224 aa12.67□□□□□ -0.38
NUP54-205ENST00000507257 RPL36AP83881 106 aaKnown RBP12.67□□□□□ -0.38
NUP54-205ENST00000507257 LRRC75A-AS1Q8N1F1 130 aa12.67□□□□□ -0.38
NUP54-205ENST00000507257 RPL36ALQ969Q0 106 aaKnown RBP12.67□□□□□ -0.38
NUP54-205ENST00000507257 OBSCN-AS1Q96MR7 158 aa12.67□□□□□ -0.38
NUP54-205ENST00000507257 MAP6D1Q9H9H5 199 aa12.67□□□□□ -0.38
NUP54-205ENST00000507257 H0YGX0 51 aa12.65□□□□□ -0.38
NUP54-205ENST00000507257 GAGE2AQ6NT46 116 aa12.65□□□□□ -0.38
NUP54-205ENST00000507257 C3orf56Q8N813 242 aa12.65□□□□□ -0.38
NUP54-205ENST00000507257 ZNF702PQ9H963 129 aa12.65□□□□□ -0.38
NUP54-205ENST00000507257 TRAV13-1A0A0B4J241 112 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 K7EQD1 137 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 NTM-AS1Q6ZSK4 140 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 J3QLI3 93 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 DSCR9P59020 149 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 RPS28P62857 69 aaKnown RBP12.64□□□□□ -0.39
NUP54-205ENST00000507257 Q6JHZ5 121 aa12.64□□□□□ -0.39
NUP54-205ENST00000507257 MUC6Q6W4X9 2439 aa12.63□□□□□ -0.39
NUP54-205ENST00000507257 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.63□□□□□ -0.392e-7■■■■■ 42.4
NUP54-205ENST00000507257 SLURP1P55000 103 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 LINC00337Q8N6G1 96 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 Q96MF0 132 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 ATRXP46100 2492 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 IGKV2-28A0A075B6P5 120 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 DNAL4O96015 105 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 IGKV2D-28P01615 120 aa12.62□□□□□ -0.39
NUP54-205ENST00000507257 J3KT08 172 aa12.61□□□□□ -0.39
NUP54-205ENST00000507257 RPL18AQ02543 176 aaKnown RBP12.6□□□□□ -0.39
NUP54-205ENST00000507257 Q9HAA7 133 aa12.6□□□□□ -0.39
NUP54-205ENST00000507257 SND1-IT1Q9HBX3 110 aa12.6□□□□□ -0.39
NUP54-205ENST00000507257 LINC01356Q8N9X3 169 aa12.6□□□□□ -0.39
NUP54-205ENST00000507257 COX7B2Q8TF08 81 aa12.6□□□□□ -0.39
NUP54-205ENST00000507257 KLK5Q9Y337 293 aaPredicted RBP12.6□□□□□ -0.39
NUP54-205ENST00000507257 MIR7-3HGQ8N6C7 128 aa12.59□□□□□ -0.39
NUP54-205ENST00000507257 CELSR1Q9NYQ6 3014 aa12.59□□□□□ -0.39
NUP54-205ENST00000507257 SMIM11BQ8TCY0 68 aa12.58□□□□□ -0.39
NUP54-205ENST00000507257 TMEM243Q9BU79 118 aa12.58□□□□□ -0.39
NUP54-205ENST00000507257 TRGV1A0A0A0MS02 117 aa12.57□□□□□ -0.4
NUP54-205ENST00000507257 DEFB114Q30KQ6 69 aa12.57□□□□□ -0.4
NUP54-205ENST00000507257 Q6YL49 198 aa12.57□□□□□ -0.4
NUP54-205ENST00000507257 C1orf158Q8N1D5 194 aa12.57□□□□□ -0.4
NUP54-205ENST00000507257 A0A087WYN8 130 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 IBA57-AS1B1ANH7 110 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 DYNLRB2Q8TF09 96 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 C4orf3Q8WVX3 66 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 UBE2L6O14933 153 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 FSHBP01225 129 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 GNLYP22749 145 aa12.56□□□□□ -0.4
NUP54-205ENST00000507257 TRAV25A0A0B4J276 109 aa12.54□□□□□ -0.4
NUP54-205ENST00000507257 DEFB136Q30KP8 78 aa12.54□□□□□ -0.4
NUP54-205ENST00000507257 C18orf65Q6ZTR6 163 aa12.54□□□□□ -0.4
NUP54-205ENST00000507257 SERP2Q8N6R1 65 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms