RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 C15orf32Q32M92 178 aa11.5□□□□□ -0.57
CTDSP1-201ENST00000273062 BRD3OSQ6XYD6 125 aa11.5□□□□□ -0.57
CTDSP1-201ENST00000273062 G3V318 75 aa11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 ATP6V0E1O15342 81 aa11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 HOXD3P31249 432 aaPredicted RBP11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 CIRBPQ14011 172 aaKnown RBP11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 LINC00846Q9NV44 126 aa11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 IGHV1-58A0A0C4DH39 117 aa11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 CCL19Q99731 98 aa11.49□□□□□ -0.57
CTDSP1-201ENST00000273062 HILS1P60008 231 aa11.48□□□□□ -0.57
CTDSP1-201ENST00000273062 C20orf203Q8NBC4 194 aa11.48□□□□□ -0.57
CTDSP1-201ENST00000273062 TMEM86BQ8N661 226 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 WFDC11Q8NEX6 87 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 C14orf132Q9NPU4 83 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 ZNF462Q96JM2 2506 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 CLEC19AQ6UXS0 136 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 VSIG2Q96IQ7 327 aa11.47□□□□□ -0.57
CTDSP1-201ENST00000273062 MRPL53Q96EL3 112 aaKnown RBP11.46□□□□□ -0.57
CTDSP1-201ENST00000273062 POLQO75417 2590 aa11.46□□□□□ -0.57
CTDSP1-201ENST00000273062 CENPEQ02224 2701 aa11.46□□□□□ -0.57
CTDSP1-201ENST00000273062 ZNF625Q96I27 306 aaPredicted RBP11.46□□□□□ -0.58
CTDSP1-201ENST00000273062 IGHV4-30-2A0A087WSY4 118 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 FAM236DA0A1B0GTK5 79 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 FAM236CP0DP71 79 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 WFDC9Q8NEX5 89 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 C9orf85Q96MD7 179 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 CCDC140Q96MF4 163 aa11.45□□□□□ -0.58
CTDSP1-201ENST00000273062 INAFM2P0DMQ5 153 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 CD28P10747 220 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 MRPS36P82909 103 aaKnown RBP11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 SOSTDC1Q6X4U4 206 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 FBN2P35556 2912 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 DNAL4O96015 105 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 IGHV4-38-2P0DP08 117 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 FAM208BQ5VWN6 2430 aa11.44□□□□□ -0.58
CTDSP1-201ENST00000273062 M0QY20 66 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 MED14OSP0DP75 135 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 SEC61GP60059 68 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 PRIMA1Q86XR5 153 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 C5orf56Q8N8D9 126 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 LINC00308Q8TCZ7 52 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 TMEM243Q9BU79 118 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 C16orf95Q9H693 158 aa11.43□□□□□ -0.58
CTDSP1-201ENST00000273062 LRRK2Q5S007 2527 aa11.42□□□□□ -0.58
CTDSP1-201ENST00000273062 TRBV6-5A0A0K0K1A5 114 aa11.42□□□□□ -0.58
CTDSP1-201ENST00000273062 Q6JHZ5 121 aa11.42□□□□□ -0.58
CTDSP1-201ENST00000273062 FAM110DQ8TAY7 271 aaPredicted RBP11.42□□□□□ -0.58
CTDSP1-201ENST00000273062 IGKV3-7A0A075B6H7 116 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 C20orf197Q8N268 126 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 UBE2D4Q9Y2X8 147 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 LENEPQ9Y5L5 61 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 LY6EQ16553 131 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 FAM222AQ5U5X8 452 aa11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 BBC3Q96PG8 261 aaPredicted RBP11.41□□□□□ -0.58
CTDSP1-201ENST00000273062 A0A0U1RQV1 116 aa11.4□□□□□ -0.58
CTDSP1-201ENST00000273062 TRBV12-3P01733 135 aa11.4□□□□□ -0.58
CTDSP1-201ENST00000273062 RPL28P46779 137 aaKnown RBP11.4□□□□□ -0.58
CTDSP1-201ENST00000273062 IGHG2P01859 326 aa11.4□□□□□ -0.58
CTDSP1-201ENST00000273062 FP248Q71RG6 208 aaPredicted RBP11.4□□□□□ -0.58
CTDSP1-201ENST00000273062 EPM2AB3EWF7 344 aa11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 GHRHP01286 108 aa11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 ZANQ9Y493 2812 aa11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 USP9YO00507 2555 aaPredicted RBP11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 TRAV23DV6A0A075B6W5 121 aa11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 KLK9Q9UKQ9 250 aa11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.39□□□□□ -0.59
CTDSP1-201ENST00000273062 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.38□□□□□ -0.595e-8■■■■□ 24.7
CTDSP1-201ENST00000273062 CSPG4Q6UVK1 2322 aa11.38□□□□□ -0.59
CTDSP1-201ENST00000273062 EPG5Q9HCE0 2579 aa11.37□□□□□ -0.59
CTDSP1-201ENST00000273062 ZNF415Q09FC8 603 aa11.37□□□□□ -0.59
CTDSP1-201ENST00000273062 CDKN2A-AS1Q9UH64 79 aa11.37□□□□□ -0.59
CTDSP1-201ENST00000273062 MOB4Q9Y3A3 225 aa11.37□□□□□ -0.59
CTDSP1-201ENST00000273062 U3KQE9 123 aa11.37□□□□□ -0.59
CTDSP1-201ENST00000273062 NDUFC2O95298 119 aa11.36□□□□□ -0.59
CTDSP1-201ENST00000273062 MAPK1IP1LQ8NDC0 245 aa11.36□□□□□ -0.59
CTDSP1-201ENST00000273062 A0A087WYN8 130 aa11.36□□□□□ -0.59
CTDSP1-201ENST00000273062 TIMM17BO60830 172 aa11.36□□□□□ -0.59
CTDSP1-201ENST00000273062 TRAV12-2A0A075B6T6 113 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 H3BUX3 64 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 FAM19A1Q7Z5A9 133 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 Q9H8V8 135 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 Q9UF83 564 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 NCR3O14931 201 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 LYPD5Q6UWN5 251 aa11.35□□□□□ -0.59
CTDSP1-201ENST00000273062 ANKRD17O75179 2603 aaKnown RBP11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 H7BZZ5 65 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 SOCS3O14543 225 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 MSMBP08118 114 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 XCL1P47992 114 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 UNQ9165/PRO28630Q6UXU0 137 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 LINC00474Q9P2X8 69 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 XCL2Q9UBD3 114 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 NDUFA1O15239 70 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 BLCAPP62952 87 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 PIK3CD-AS1Q5SR53 167 aa11.34□□□□□ -0.59
CTDSP1-201ENST00000273062 PTPN13Q12923 2485 aa11.33□□□□□ -0.59
CTDSP1-201ENST00000273062 ABCA12Q86UK0 2595 aa11.33□□□□□ -0.59
CTDSP1-201ENST00000273062 PSMB8P28062 276 aa11.33□□□□□ -0.6
CTDSP1-201ENST00000273062 APRG1Q8IVJ8 170 aa11.33□□□□□ -0.6
CTDSP1-201ENST00000273062 SERP1Q9Y6X1 66 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 159 ms