RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 BPESC1Q9GZL8 116 aa9.59□□□□□ -0.87
NUP54-201ENST00000264883 PYGO1Q9Y3Y4 419 aa9.59□□□□□ -0.87
NUP54-201ENST00000264883 IGHV3OR16-10A0A075B7F0 116 aa9.59□□□□□ -0.87
NUP54-201ENST00000264883 RNASE13Q5GAN3 156 aaKnown RBP9.59□□□□□ -0.87
NUP54-201ENST00000264883 FAM104AQ969W3 186 aa9.59□□□□□ -0.87
NUP54-201ENST00000264883 C22orf24Q9Y442 160 aa9.59□□□□□ -0.87
NUP54-201ENST00000264883 CCL19Q99731 98 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 UPK3BQ9BT76 320 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 USP9YO00507 2555 aaPredicted RBP9.58□□□□□ -0.88
NUP54-201ENST00000264883 IGKV3-7A0A075B6H7 116 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 TINCRA0A1B0GVN0 87 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 CIRBPQ14011 172 aaKnown RBP9.58□□□□□ -0.88
NUP54-201ENST00000264883 FAM222AQ5U5X8 452 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 Q5XG85 94 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 MED13LQ71F56 2210 aa9.58□□□□□ -0.88
NUP54-201ENST00000264883 IGHV3-16A0A0C4DH30 117 aa9.57□□□□□ -0.88
NUP54-201ENST00000264883 FBN2P35556 2912 aa9.57□□□□□ -0.88
NUP54-201ENST00000264883 RS1O15537 224 aa9.57□□□□□ -0.88
NUP54-201ENST00000264883 LINC00308Q8TCZ7 52 aa9.57□□□□□ -0.88
NUP54-201ENST00000264883 CENPEQ02224 2701 aa9.57□□□□□ -0.88
NUP54-201ENST00000264883 IGLV1-40P01703 118 aa9.56□□□□□ -0.88
NUP54-201ENST00000264883 Q8N2B8 174 aa9.56□□□□□ -0.88
NUP54-201ENST00000264883 RNF152Q8N8N0 203 aa9.56□□□□□ -0.88
NUP54-201ENST00000264883 IGKV3D-7A0A0C4DH55 119 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 A6NDX4 124 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 NDUFA1O15239 70 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 MRAPQ8TCY5 172 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 TENM4Q6N022 2769 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 CELSR2Q9HCU4 2923 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 ABCA2Q9BZC7 2435 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 IGHV3-11P01762 117 aa9.55□□□□□ -0.88
NUP54-201ENST00000264883 MALP21145 153 aa9.54□□□□□ -0.88
NUP54-201ENST00000264883 SNRPD3P62318 126 aaKnown RBP9.54□□□□□ -0.88
NUP54-201ENST00000264883 C10orf105Q8TEF2 133 aa9.54□□□□□ -0.88
NUP54-201ENST00000264883 FAM218AQ96MZ4 157 aa9.54□□□□□ -0.88
NUP54-201ENST00000264883 PTPN13Q12923 2485 aa9.54□□□□□ -0.88
NUP54-201ENST00000264883 IGHV1OR15-1A0A075B7D0 117 aa9.53□□□□□ -0.88
NUP54-201ENST00000264883 DNAL4O96015 105 aa9.53□□□□□ -0.88
NUP54-201ENST00000264883 Q6JHZ5 121 aa9.53□□□□□ -0.88
NUP54-201ENST00000264883 PRIMA1Q86XR5 153 aa9.53□□□□□ -0.88
NUP54-201ENST00000264883 NACAE9PAV3 2078 aa9.53□□□□□ -0.88
NUP54-201ENST00000264883 A0A087WVE0 104 aa9.52□□□□□ -0.88
NUP54-201ENST00000264883 A0A0U1RRA0 63 aa9.52□□□□□ -0.88
NUP54-201ENST00000264883 SYNJ2BPP57105 145 aa9.52□□□□□ -0.88
NUP54-201ENST00000264883 Q9HAA7 133 aa9.52□□□□□ -0.88
NUP54-201ENST00000264883 VPS13CQ709C8 3753 aa9.52□□□□□ -0.89
NUP54-201ENST00000264883 USP17L23D6RBM5 183 aa9.52□□□□□ -0.89
NUP54-201ENST00000264883 CFHR3Q02985 330 aa9.52□□□□□ -0.89
NUP54-201ENST00000264883 COPS9Q8WXC6 57 aa9.52□□□□□ -0.89
NUP54-201ENST00000264883 PIMREGQ9BSJ6 248 aa9.52□□□□□ -0.89
NUP54-201ENST00000264883 MAP1AP78559 2803 aaPredicted RBP9.52□□□□□ -0.89
NUP54-201ENST00000264883 IGHV4-61A0A0C4DH41 118 aa9.51□□□□□ -0.89
NUP54-201ENST00000264883 TMEM89A2RUT3 159 aa9.51□□□□□ -0.89
NUP54-201ENST00000264883 CDKN2A-AS1Q9UH64 79 aa9.51□□□□□ -0.89
NUP54-201ENST00000264883 POLQO75417 2590 aa9.51□□□□□ -0.89
NUP54-201ENST00000264883 ZNF625Q96I27 306 aaPredicted RBP9.51□□□□□ -0.89
NUP54-201ENST00000264883 Q9H8V8 135 aa9.51□□□□□ -0.89
NUP54-201ENST00000264883 H3BUX3 64 aa9.5□□□□□ -0.89
NUP54-201ENST00000264883 SOSTDC1Q6X4U4 206 aa9.5□□□□□ -0.89
NUP54-201ENST00000264883 BRD3OSQ6XYD6 125 aa9.5□□□□□ -0.89
NUP54-201ENST00000264883 LINC01561Q8N1V8 128 aa9.5□□□□□ -0.89
NUP54-201ENST00000264883 ANKRD17O75179 2603 aaKnown RBP9.5□□□□□ -0.89
NUP54-201ENST00000264883 IGHV4-30-2A0A087WSY4 118 aa9.5□□□□□ -0.89
NUP54-201ENST00000264883 ABCA12Q86UK0 2595 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 ZNF415Q09FC8 603 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 LY6EQ16553 131 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 PIK3CD-AS1Q5SR53 167 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 LINC00846Q9NV44 126 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 UBE2D4Q9Y2X8 147 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 HELZ2Q9BYK8 2649 aaKnown RBP9.49□□□□□ -0.89
NUP54-201ENST00000264883 TRAV12-2A0A075B6T6 113 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 K7EQG2 157 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 C14orf132Q9NPU4 83 aa9.49□□□□□ -0.89
NUP54-201ENST00000264883 HOXD3P31249 432 aaPredicted RBP9.48□□□□□ -0.89
NUP54-201ENST00000264883 CSMD2Q7Z408 3487 aa9.48□□□□□ -0.89
NUP54-201ENST00000264883 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.47□□□□□ -0.89
NUP54-201ENST00000264883 IGHV3-73A0A0B4J1V6 119 aa9.47□□□□□ -0.89
NUP54-201ENST00000264883 IGKV2-29A2NJV5 120 aaPredicted RBP9.47□□□□□ -0.89
NUP54-201ENST00000264883 DSCR9P59020 149 aa9.47□□□□□ -0.89
NUP54-201ENST00000264883 KRTAP10-9P60411 292 aa9.47□□□□□ -0.89
NUP54-201ENST00000264883 FHL2Q14192 279 aa9.47□□□□□ -0.89
NUP54-201ENST00000264883 HIST2H2BCQ6DN03 193 aa9.46□□□□□ -0.89
NUP54-201ENST00000264883 HIST2H2BDQ6DRA6 164 aa9.46□□□□□ -0.89
NUP54-201ENST00000264883 CHCHD7Q9BUK0 85 aa9.46□□□□□ -0.89
NUP54-201ENST00000264883 APCP25054 2843 aa9.46□□□□□ -0.89
NUP54-201ENST00000264883 IGLV5-45A0A087WSX0 123 aa9.46□□□□□ -0.9
NUP54-201ENST00000264883 IGKV3-20P01619 116 aa9.46□□□□□ -0.9
NUP54-201ENST00000264883 IGHV4-38-2P0DP08 117 aa9.46□□□□□ -0.9
NUP54-201ENST00000264883 PSMB8P28062 276 aa9.46□□□□□ -0.9
NUP54-201ENST00000264883 BLCAPP62952 87 aa9.46□□□□□ -0.9
NUP54-201ENST00000264883 C9orf129Q5T035 196 aaKnown RBP9.46□□□□□ -0.9
NUP54-201ENST00000264883 NDUFC2-KCTD14E9PQ53 114 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.45□□□□□ -0.9
NUP54-201ENST00000264883 NAV2Q8IVL1 2488 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 SVEP1Q4LDE5 3571 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 DOPEY2Q9Y3R5 2298 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 A0A096LNT2 108 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 NDUFC2O95298 119 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 PROK1P58294 105 aa9.45□□□□□ -0.9
NUP54-201ENST00000264883 RPL28P46779 137 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms