RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	OM45	P16547	393 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	DBP5	P20449	482 aa	Known RBP	4.98	□□□□□ -1.61
CAF4	YKR036C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
CAF4	YKR036C	CAP1	P28495	268 aa	Known RBP	4.98	□□□□□ -1.61
CAF4	YKR036C	TRZ1	P36159	838 aa	Predicted RBP	4.98	□□□□□ -1.61
CAF4	YKR036C	YBP1	P38315	674 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	SPC97	P38863	823 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	STL1	P39932	569 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	UBP5	P39944	805 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	IES5	P40060	125 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	SER33	P40510	469 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	FOL1	P53848	824 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	CLU1	Q03690	1277 aa	Known RBP	4.98	□□□□□ -1.61
CAF4	YKR036C	GIS4	Q04233	774 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	RGC1	Q06108	1083 aa	Known RBP	4.98	□□□□□ -1.61
CAF4	YKR036C	SPH1	Q06160	661 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	YPR078C	Q06813	372 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	YDL073W	Q07454	984 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	YPR202W	Q08993	238 aa		4.98	□□□□□ -1.61
CAF4	YKR036C	TRP2	P00899	507 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	COR1	P07256	457 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GPA2	P10823	449 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	YUR1	P26725	428 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	TIM23	P32897	222 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	CLG1	P35190	452 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	BLI1	P35727	113 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	KAP104	P38217	918 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	YBR138C	P38277	524 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GOS1	P38736	223 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	VPS45	P38932	577 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	BOL3	P39724	118 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	SER3	P40054	469 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	DSE1	P40077	573 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GCD10	P41814	478 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GNP1	P48813	663 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	RMR1	P53060	241 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	YNL058C	P53947	316 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	YDR476C	Q03362	224 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GYP1	Q08484	637 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	ERP3	Q12403	225 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	LDB19	Q12502	818 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	NOT5	Q12514	560 aa	Predicted RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	YDR524C-B	Q3E6R4	66 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	AI5_ALPHA	Q9ZZX1	630 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	MET6	P05694	767 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	GCR1	P07261	785 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	LEU1	P07264	779 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	SPO16	P17122	198 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	RAD14	P28519	371 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	PRO3	P32263	286 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	TFC4	P33339	1025 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	SHP1	P34223	423 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	MAE1	P36013	669 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	EAP1	P36041	632 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	MCR1	P36060	302 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	GPT2	P36148	743 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	ETR1	P38071	380 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	GRS1	P38088	690 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	VHC1	P38329	1120 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	SEO1	P39709	593 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	ALG2	P43636	503 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	EMC2	P47133	292 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	ORC3	P54790	616 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	BUD22	Q04347	519 aa	Known RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	BCP1	Q06338	283 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	ARR2	Q06597	130 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	DIA2	Q08496	732 aa	Predicted RBP	4.97	□□□□□ -1.61
CAF4	YKR036C	BAG7	Q12128	409 aa		4.97	□□□□□ -1.61
CAF4	YKR036C	YMR084W	A2P2R3	262 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	ATP2	P00830	511 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	FUS1	P11710	512 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	POX1	P13711	748 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	PDC5	P16467	563 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	RIT1	P23796	513 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	HEM3	P28789	327 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	TFC1	P32367	649 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	ANP1	P32629	500 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	MYO3	P36006	1272 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	CUE2	P36075	443 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	YBR139W	P38109	508 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	SWC5	P38326	303 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	END3	P39013	349 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	SAH1	P39954	449 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	HXT8	P40886	569 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	PAC11	P40960	533 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	PHB1	P40961	287 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	TY4A-J	P47023	414 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	MDE1	P47095	244 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	ASE1	P50275	885 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	PAN2	P53010	1115 aa	Predicted RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	YGL138C	P53122	345 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	YGL039W	P53183	348 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	CWC25	P53854	179 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	ISU1	Q03020	165 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	DUS3	Q06053	668 aa	Known RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	ASA1	Q06822	443 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	BRE4	Q07660	1125 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	ISA1	Q07821	250 aa	Predicted RBP	4.96	□□□□□ -1.62
CAF4	YKR036C	YLR031W	Q07978	186 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	PUS7	Q08647	676 aa	Known RBP	4.96	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 115.1 ms