RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	HSH155	P49955	971 aa	Known RBP	3.59	□□□□□ -1.83
NUP60	YAR002W	UTP8	P53276	713 aa	Known RBP	3.59	□□□□□ -1.83
NUP60	YAR002W	SLD5	Q03406	294 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	DUS4	Q06063	367 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	SFH1	Q06168	426 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	EAF1	Q06337	982 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	RSC58	Q07979	502 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	RCL1	Q08096	367 aa	Predicted RBP	3.59	□□□□□ -1.83
NUP60	YAR002W	IES4	Q08561	116 aa		3.59	□□□□□ -1.83
NUP60	YAR002W	CFT2	Q12102	859 aa	Predicted RBP	3.59	□□□□□ -1.83
NUP60	YAR002W	RIO1	Q12196	484 aa	Known RBP	3.59	□□□□□ -1.83
NUP60	YAR002W	YLR462W	O13556	202 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	GCD1	P09032	578 aa	Predicted RBP	3.59	□□□□□ -1.84
NUP60	YAR002W	HSP60	P19882	572 aa	Known RBP	3.59	□□□□□ -1.84
NUP60	YAR002W	SWI3	P32591	825 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	SLA2	P33338	968 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	TFC4	P33339	1025 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	SPP381	P38282	291 aa	Predicted RBP	3.59	□□□□□ -1.84
NUP60	YAR002W	RRT2	P38332	387 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YHL049C	P38722	271 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	PTC7	P38797	343 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YEL075C	P39972	122 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	EAF5	P39995	279 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YER189W	P40104	122 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YTA12	P40341	825 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	GTS1	P40956	396 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YNL320W	P42840	284 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YFL064C	P43540	174 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	PFD1	P46988	109 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	CPR7	P47103	393 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YJR079W	P47126	109 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	RIM8	P53179	542 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	MDR1	P53258	950 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YNL146W	P53906	100 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	RPA49	Q01080	415 aa	Predicted RBP	3.59	□□□□□ -1.84
NUP60	YAR002W	SRP1	Q02821	542 aa	Known RBP	3.59	□□□□□ -1.84
NUP60	YAR002W	SSY1	Q03770	852 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YMR321C	Q04898	105 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	STE23	Q06010	1027 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	AIM41	Q12032	185 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	OSW2	Q12202	724 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	YBL111C	Q3E7Y5	667 aa		3.59	□□□□□ -1.84
NUP60	YAR002W	DAL2	P25335	343 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	ARE1	P25628	610 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	DEP1	P31385	405 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	EFT1	P32324	842 aa	Known RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	DBF4	P32325	704 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	CBF2	P32504	956 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	CSG2	P35206	410 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	MRX3	P38172	270 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	GGA2	P38817	585 aa	Known RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	SAK1	P38990	1142 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	KAP123	P40069	1113 aa	Known RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	FTR1	P40088	404 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	YIL089W	P40500	205 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	YFL054C	P43549	646 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	ALR2	P43553	858 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
NUP60	YAR002W	NMD5	P46970	1048 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	YJR039W	P47107	1121 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	RPS7B	P48164	190 aa	Known RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	ASN1	P49089	572 aa	Known RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	ORC5	P50874	479 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	SHE10	P53075	577 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	CUL3	P53202	744 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	YGR111W	P53265	400 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	MTG1	Q03151	367 aa	Predicted RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	RPN4	Q03465	531 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	CEF1	Q03654	590 aa	Predicted RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	ATG16	Q03818	150 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	PPM1	Q04081	328 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	TDA9	Q04545	1251 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	IWR1	Q07532	353 aa	Predicted RBP	3.58	□□□□□ -1.84
NUP60	YAR002W	FLC1	Q08967	793 aa		3.58	□□□□□ -1.84
NUP60	YAR002W	RPS3	P05750	240 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	NAT1	P12945	854 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	CDC42	P19073	191 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	IME1	P21190	360 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	RNR1	P21524	888 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	CLB1	P24868	471 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	RME1	P32338	300 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	AAR2	P32357	355 aa	Predicted RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	DPH2	P32461	534 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	AIM26	P32858	118 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	YKR073C	P36153	106 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	GDT1	P38301	280 aa	Predicted RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	MMS21	P38632	267 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	YHR020W	P38708	688 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	END3	P39013	349 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	PXA1	P41909	870 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	PHO86	P46956	311 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	FOL2	P51601	243 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	UTP6	Q02354	440 aa	Known RBP	3.57	□□□□□ -1.84
NUP60	YAR002W	ERV41	Q04651	352 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	YDR222W	Q04925	415 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	YDR278C	Q05612	105 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	YLL058W	Q12198	575 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	GIS3	Q12418	502 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	TRM11	Q12463	433 aa		3.57	□□□□□ -1.84
NUP60	YAR002W	AI5_BETA	Q9ZZX0	354 aa		3.57	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 117 ms