RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 KRT85P78386 507 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 RBM10P98175 930 aaKnown RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 COL9A3Q14050 684 aaPredicted RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 TJAP1Q5JTD0 557 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 PLA2G2CQ5R387 149 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 IFFO2Q5TF58 517 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 MAMSTRQ6ZN01 415 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 DRC1Q96MC2 740 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 SETDB2Q96T68 719 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 SEC62Q99442 399 aaKnown RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 OFD1O75665 1012 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 CEBPZQ03701 1054 aaKnown RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 FAM184AQ8NB25 1140 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 MAP4K1Q92918 833 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 PDLIM2Q96JY6 352 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 KRTAP3-3Q9BYR6 98 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 KRTAP3-2Q9BYR7 98 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 TM6SF1Q9BZW5 370 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 TSR3Q9UJK0 312 aaKnown RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 DBNLQ9UJU6 430 aaKnown RBP6.32□□□□□ -1.4
VAPA-203ENST00000577539 PCDHB9Q9Y5E1 797 aa6.32□□□□□ -1.4
VAPA-203ENST00000577539 USP42Q9H9J4 1324 aaKnown RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 RNF40O75150 1001 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 ADCY5O95622 1261 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 PDCP20941 246 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 SEC13P55735 322 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 GORABQ5T7V8 394 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 CDC37L1Q7L3B6 337 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 BICD2Q8TD16 824 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 NPHP4O75161 1426 aaPredicted RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 LOC102724159A0A0B4J2E5 919 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 TPM2P07951 284 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 PWP2Q15269 919 aaKnown RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 ANKRD1Q15327 319 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 HS1BP3Q53T59 392 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 TNNI3KQ59H18 835 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 TOM1L2Q6ZVM7 507 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 ZNF511Q8NB15 262 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 SPC24Q8NBT2 197 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 ZNF358Q9NW07 568 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 FAM13BQ9NYF5 915 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 DOLKQ9UPQ8 538 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 FPGT-TNNI3KV9GXZ4 949 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 FAM208AQ9UK61 1670 aaKnown RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 FER1L4A9Z1Z3 1794 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 XRN1Q8IZH2 1706 aaKnown RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 A0A0G2JS52 829 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 GOLIM4O00461 696 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 CYP27B1O15528 508 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 LETM1O95202 739 aaPredicted RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 TIMM10P62072 90 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 CKAP2LQ8IYA6 745 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 KDF1Q8NAX2 398 aaPredicted RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 BAP1Q92560 729 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 TTC12Q9H892 705 aaPredicted RBP6.31□□□□□ -1.4
VAPA-203ENST00000577539 PRDM11Q9NQV5 511 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 PCDH10Q9P2E7 1040 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 DCTN4Q9UJW0 460 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 HPS5Q9UPZ3 1129 aa6.31□□□□□ -1.4
VAPA-203ENST00000577539 JAK2O60674 1132 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 RPS6KB1P23443 525 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 DRC7Q8IY82 874 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 DCAF5Q96JK2 942 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 NEK1Q96PY6 1258 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 FAM129BQ96TA1 746 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 ARHGAP9Q9BRR9 750 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 NBPF3Q9H094 633 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 STRN4Q9NRL3 753 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 LRFN2Q9ULH4 789 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.3□□□□□ -1.4
VAPA-203ENST00000577539 SNPHO15079 494 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 ERVK-9P63128 1117 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 PTPN12Q05209 780 aaKnown RBP6.3□□□□□ -1.4
VAPA-203ENST00000577539 BRF1Q92994 677 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 TINF2Q9BSI4 451 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 RBCK1Q9BYM8 510 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 NUP62CLQ9H1M0 184 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 PCDHB3Q9Y5E6 796 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 NCAPD2Q15021 1401 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 TAF5LO75529 589 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 A1BGP04217 495 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 SH3BP2P78314 561 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 TTLL7Q6ZT98 887 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 TTC6Q86TZ1 520 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.3□□□□□ -1.4
VAPA-203ENST00000577539 HELQQ8TDG4 1101 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 IL17RAQ96F46 866 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 COPRSQ9NQ92 184 aa6.3□□□□□ -1.4
VAPA-203ENST00000577539 NFAT5O94916 1531 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 GPR182O15218 404 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 CCDC192P0DO97 292 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 CCT2P78371 535 aaKnown RBP6.29□□□□□ -1.4
VAPA-203ENST00000577539 FKBP4Q02790 459 aaKnown RBP eCLIP6.29□□□□□ -1.4
VAPA-203ENST00000577539 ST3GAL1Q11201 340 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 KRT32Q14532 448 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 Q6ZUG5 572 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 C17orf53Q8N3J3 647 aaPredicted RBP6.29□□□□□ -1.4
VAPA-203ENST00000577539 TNMDQ9H2S6 317 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 UQCRHLA0A096LP55 91 aa6.29□□□□□ -1.4
VAPA-203ENST00000577539 UQCRHP07919 91 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms