RNA–Protein interactions for RNA: YPL139C

UME1, Transcript of Component of both the Rpd3S and Rpd3L histone deacetylase complexes, yeastyeast

Gene UME1, Length 1,383 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UME1YPL139C TY1B-GR1Q12141 1755 aa12.08□□□□□ -0.48
UME1YPL139C TY1B-BLQ12490 1755 aa12.08□□□□□ -0.48
UME1YPL139C TRM732Q03496 1420 aa12.06□□□□□ -0.48
UME1YPL139C LTE1P07866 1435 aa12.04□□□□□ -0.48
UME1YPL139C YRF1-1P0CX20 1796 aa12.04□□□□□ -0.48
UME1YPL139C YRF1-5P0CX21 1796 aa12.04□□□□□ -0.48
UME1YPL139C YRF1-8P0CX22 1796 aa12.04□□□□□ -0.48
UME1YPL139C NTE1Q04958 1679 aa12.03□□□□□ -0.48
UME1YPL139C BNI1P41832 1953 aa12.03□□□□□ -0.48
UME1YPL139C VTH1P40438 1549 aa12.02□□□□□ -0.48
UME1YPL139C VTH2P40890 1549 aa12.02□□□□□ -0.48
UME1YPL139C TSC11P40061 1430 aa12.01□□□□□ -0.49
UME1YPL139C NUP159P40477 1460 aa11.99□□□□□ -0.49
UME1YPL139C RPO21P04050 1733 aaKnown RBP11.95□□□□□ -0.5
UME1YPL139C GEA2P39993 1459 aaKnown RBP11.92□□□□□ -0.5
UME1YPL139C VPS15P22219 1454 aa11.91□□□□□ -0.5
UME1YPL139C CDC27P38042 758 aa11.91□□□□□ -0.5
UME1YPL139C MYO4P32492 1471 aa11.9□□□□□ -0.5
UME1YPL139C SNQ2P32568 1501 aaKnown RBP11.88□□□□□ -0.51
UME1YPL139C SIS1P25294 352 aaKnown RBP11.88□□□□□ -0.51
UME1YPL139C ITT1Q04638 464 aa11.87□□□□□ -0.51
UME1YPL139C REB1P21538 810 aa11.86□□□□□ -0.51
UME1YPL139C UBP10P53874 792 aaPredicted RBP11.86□□□□□ -0.51
UME1YPL139C DIP2Q12220 943 aaPredicted RBP11.86□□□□□ -0.51
UME1YPL139C YTA7P40340 1379 aa11.82□□□□□ -0.52
UME1YPL139C SNT2P53127 1403 aa11.81□□□□□ -0.52
UME1YPL139C MAP2P38174 421 aaKnown RBP11.76□□□□□ -0.53
UME1YPL139C ULS1Q08562 1619 aa11.76□□□□□ -0.53
UME1YPL139C RPL17AP05740 184 aaKnown RBP11.74□□□□□ -0.53
UME1YPL139C RPL17BP46990 184 aaKnown RBP11.74□□□□□ -0.53
UME1YPL139C SPO14P36126 1683 aa11.74□□□□□ -0.53
UME1YPL139C MMS1Q06211 1407 aa11.73□□□□□ -0.53
UME1YPL139C DRS2P39524 1355 aa11.73□□□□□ -0.53
UME1YPL139C NUP170P38181 1502 aa11.67□□□□□ -0.54
UME1YPL139C PDR12Q02785 1511 aa11.67□□□□□ -0.54
UME1YPL139C MLP2P40457 1679 aa11.67□□□□□ -0.54
UME1YPL139C PDR15Q04182 1529 aaKnown RBP11.66□□□□□ -0.54
UME1YPL139C IRC20Q06554 1556 aa11.66□□□□□ -0.54
UME1YPL139C STH1P32597 1359 aa11.64□□□□□ -0.55
UME1YPL139C GDB1Q06625 1536 aa11.64□□□□□ -0.55
UME1YPL139C DNF2Q12675 1612 aa11.62□□□□□ -0.55
UME1YPL139C MIF2P35201 549 aa11.61□□□□□ -0.55
UME1YPL139C DOP1Q03921 1698 aa11.6□□□□□ -0.55
UME1YPL139C UBP9P39967 754 aa11.59□□□□□ -0.55
UME1YPL139C MET10P39692 1035 aa11.57□□□□□ -0.56
UME1YPL139C NUP157P40064 1391 aaKnown RBP11.53□□□□□ -0.56
UME1YPL139C ABP1P15891 592 aaKnown RBP11.53□□□□□ -0.56
UME1YPL139C IQG1Q12280 1495 aa11.52□□□□□ -0.57
UME1YPL139C SAS10Q12136 610 aaPredicted RBP11.52□□□□□ -0.57
UME1YPL139C RTT106P40161 455 aa11.51□□□□□ -0.57
UME1YPL139C PDR10P51533 1564 aa11.51□□□□□ -0.57
UME1YPL139C TY3B-GQ99315 1547 aa11.5□□□□□ -0.57
UME1YPL139C ARO1P08566 1588 aaKnown RBP11.45□□□□□ -0.58
UME1YPL139C TRM3Q07527 1436 aa11.44□□□□□ -0.58
UME1YPL139C YBT1P32386 1661 aa11.43□□□□□ -0.58
UME1YPL139C YKR023WP36119 530 aaKnown RBP11.42□□□□□ -0.58
UME1YPL139C CHC1P22137 1653 aaKnown RBP11.4□□□□□ -0.58
UME1YPL139C GEA1P47102 1408 aaPredicted RBP11.39□□□□□ -0.59
UME1YPL139C IFH1P39520 1085 aa11.38□□□□□ -0.59
UME1YPL139C BUD3P25558 1636 aa11.37□□□□□ -0.59
UME1YPL139C TIF4632P39936 914 aaKnown RBP11.37□□□□□ -0.59
UME1YPL139C TGL3P40308 642 aa11.36□□□□□ -0.59
UME1YPL139C YOR093CQ12275 1648 aa11.32□□□□□ -0.6
UME1YPL139C CAT8P39113 1433 aa11.31□□□□□ -0.6
UME1YPL139C YFR006WP43590 535 aa11.29□□□□□ -0.6
UME1YPL139C YSP2Q06681 1438 aa11.28□□□□□ -0.6
UME1YPL139C TAF7Q05021 590 aa11.28□□□□□ -0.6
UME1YPL139C SEC7P11075 2009 aaKnown RBP11.21□□□□□ -0.61
UME1YPL139C DNF3Q12674 1656 aa11.21□□□□□ -0.62
UME1YPL139C TFC8Q12308 588 aa11.18□□□□□ -0.62
UME1YPL139C SCY1P53009 804 aa11.17□□□□□ -0.62
UME1YPL139C HOP09932 586 aa11.16□□□□□ -0.62
UME1YPL139C SLX5P32828 619 aaKnown RBP11.16□□□□□ -0.62
UME1YPL139C DCD1P06773 312 aa11.16□□□□□ -0.62
UME1YPL139C CKB1P43639 278 aa11.16□□□□□ -0.62
UME1YPL139C BNR1P40450 1375 aa11.13□□□□□ -0.63
UME1YPL139C SPT21P35209 758 aa11.12□□□□□ -0.63
UME1YPL139C SRB8P25648 1427 aa11.06□□□□□ -0.64
UME1YPL139C VMR1P38735 1592 aa11.01□□□□□ -0.65
UME1YPL139C YAP3P38749 330 aa11.01□□□□□ -0.65
UME1YPL139C IML1P47170 1584 aa10.97□□□□□ -0.65
UME1YPL139C NUP188P52593 1655 aaKnown RBP10.96□□□□□ -0.65
UME1YPL139C USO1P25386 1790 aa10.92□□□□□ -0.66
UME1YPL139C AVT3P36062 692 aa10.9□□□□□ -0.66
UME1YPL139C MAK10Q02197 733 aa10.9□□□□□ -0.66
UME1YPL139C SSM4P40318 1319 aa10.88□□□□□ -0.67
UME1YPL139C TYS1P36421 394 aaKnown RBP10.87□□□□□ -0.67
UME1YPL139C PDR5P33302 1511 aaKnown RBP10.86□□□□□ -0.67
UME1YPL139C BUD21Q08492 214 aaPredicted RBP10.86□□□□□ -0.67
UME1YPL139C IKI3Q06706 1349 aaKnown RBP10.85□□□□□ -0.67
UME1YPL139C IPL1P38991 367 aa10.84□□□□□ -0.67
UME1YPL139C HAP1P0CE41 1502 aa10.84□□□□□ -0.67
UME1YPL139C PDR11P40550 1411 aa10.8□□□□□ -0.68
UME1YPL139C URN1Q06525 465 aaKnown RBP10.78□□□□□ -0.68
UME1YPL139C YBL029C-AQ3E756 94 aa10.77□□□□□ -0.69
UME1YPL139C BCH2P36122 765 aa10.74□□□□□ -0.69
UME1YPL139C GCN2P15442 1659 aa10.72□□□□□ -0.69
UME1YPL139C TY1B-NL2Q99337 1749 aaKnown RBP10.71□□□□□ -0.69
UME1YPL139C THI12P42883 340 aa10.68□□□□□ -0.7
UME1YPL139C THI5P43534 340 aa10.68□□□□□ -0.7
Retrieved 100 of 5,963 RNA–protein pairs in 53.2 ms