RNA–Protein interactions for RNA: YOR036W

PEP12, Transcript of Target membrane receptor (t-SNARE), yeastyeast

Gene PEP12, Length 867 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEP12YOR036W YEL023CP39992 682 aa7.93□□□□□ -1.14
PEP12YOR036W PTC4P38089 393 aa7.92□□□□□ -1.14
PEP12YOR036W CHL1P22516 861 aaPredicted RBP7.9□□□□□ -1.14
PEP12YOR036W BCK2P33306 851 aa7.9□□□□□ -1.14
PEP12YOR036W PRE3P38624 215 aa7.89□□□□□ -1.15
PEP12YOR036W YDR344CQ05510 147 aa7.84□□□□□ -1.15
PEP12YOR036W GRE2Q12068 342 aaKnown RBP7.84□□□□□ -1.15
PEP12YOR036W RAM2P29703 316 aa7.79□□□□□ -1.16
PEP12YOR036W EDS1P38073 919 aa7.79□□□□□ -1.16
PEP12YOR036W PML39Q03760 334 aa7.79□□□□□ -1.16
PEP12YOR036W MAK11P20484 414 aaKnown RBP7.78□□□□□ -1.16
PEP12YOR036W MIF2P35201 549 aa7.78□□□□□ -1.16
PEP12YOR036W PTC3P34221 468 aaKnown RBP7.76□□□□□ -1.17
PEP12YOR036W NST1P53935 1240 aa7.75□□□□□ -1.17
PEP12YOR036W GUT1P32190 709 aa7.74□□□□□ -1.17
PEP12YOR036W ATH1P48016 1211 aa7.74□□□□□ -1.17
PEP12YOR036W VRP1P37370 817 aa7.72□□□□□ -1.17
PEP12YOR036W ELP4Q02884 456 aaKnown RBP7.71□□□□□ -1.18
PEP12YOR036W SOL3P38858 249 aa7.69□□□□□ -1.18
PEP12YOR036W XDJ1P39102 459 aa7.69□□□□□ -1.18
PEP12YOR036W MID1P41821 548 aa7.69□□□□□ -1.18
PEP12YOR036W COQ8P27697 501 aa7.68□□□□□ -1.18
PEP12YOR036W ARH1P48360 493 aa7.67□□□□□ -1.18
PEP12YOR036W ILV3P39522 585 aaKnown RBP7.62□□□□□ -1.19
PEP12YOR036W AI4P03878 556 aa7.61□□□□□ -1.19
PEP12YOR036W MPH3P0CE00 602 aa7.61□□□□□ -1.19
PEP12YOR036W PEX29Q03370 554 aa7.57□□□□□ -1.2
PEP12YOR036W DPS1P04802 557 aaKnown RBP7.56□□□□□ -1.2
PEP12YOR036W SPT23P35210 1082 aa7.56□□□□□ -1.2
PEP12YOR036W YGR273CP53329 174 aa7.53□□□□□ -1.2
PEP12YOR036W HAP5Q02516 242 aa7.53□□□□□ -1.2
PEP12YOR036W BNI4P53858 892 aa7.5□□□□□ -1.21
PEP12YOR036W MPC54Q08550 464 aa7.5□□□□□ -1.21
PEP12YOR036W NOP53Q12080 455 aaKnown RBP7.5□□□□□ -1.21
PEP12YOR036W YML082WQ04533 649 aaKnown RBP7.46□□□□□ -1.22
PEP12YOR036W SLI15P38283 698 aa7.44□□□□□ -1.22
PEP12YOR036W PTC2P39966 464 aaKnown RBP7.44□□□□□ -1.22
PEP12YOR036W SRC1Q03707 834 aa7.44□□□□□ -1.22
PEP12YOR036W NMA111P53920 997 aa7.43□□□□□ -1.22
PEP12YOR036W DPL1Q05567 589 aa7.39□□□□□ -1.23
PEP12YOR036W YPR015CQ12531 247 aa7.37□□□□□ -1.23
PEP12YOR036W KEX1P09620 729 aa7.35□□□□□ -1.23
PEP12YOR036W RAM1P22007 431 aa7.34□□□□□ -1.23
PEP12YOR036W RAS1P01119 309 aa7.31□□□□□ -1.24
PEP12YOR036W CDC73Q06697 393 aa7.31□□□□□ -1.24
PEP12YOR036W ISU2Q12056 156 aa7.29□□□□□ -1.24
PEP12YOR036W YLR326WQ06170 240 aaKnown RBP7.27□□□□□ -1.25
PEP12YOR036W UBP14P38237 781 aaKnown RBP7.26□□□□□ -1.25
PEP12YOR036W SET1P38827 1080 aaKnown RBP7.26□□□□□ -1.25
PEP12YOR036W PDR1P12383 1068 aa7.24□□□□□ -1.25
PEP12YOR036W VHR2P40041 505 aa7.23□□□□□ -1.25
PEP12YOR036W PCS60P38137 543 aaKnown RBP RIP-Chip data7.22□□□□□ -1.25not detected
PEP12YOR036W GYP1Q08484 637 aa7.21□□□□□ -1.26
PEP12YOR036W SDH2P21801 266 aa7.2□□□□□ -1.26
PEP12YOR036W AMS1P22855 1083 aa7.19□□□□□ -1.26
PEP12YOR036W RGA2Q06407 1009 aa7.18□□□□□ -1.26
PEP12YOR036W RAD54P32863 898 aa7.17□□□□□ -1.26
PEP12YOR036W RGA1P39083 1007 aa7.16□□□□□ -1.26
PEP12YOR036W SAS4Q04003 481 aa7.13□□□□□ -1.27
PEP12YOR036W TRK1P12685 1235 aa7.12□□□□□ -1.27
PEP12YOR036W YDR090CQ03193 310 aa7.12□□□□□ -1.27
PEP12YOR036W BUD20Q08004 166 aaPredicted RBP7.08□□□□□ -1.28
PEP12YOR036W RPP1BP10622 106 aaKnown RBP7.07□□□□□ -1.28
PEP12YOR036W GAP1P19145 602 aaPredicted RBP7.06□□□□□ -1.28
PEP12YOR036W YRR1Q12172 810 aa7.06□□□□□ -1.28
PEP12YOR036W STR2P47164 639 aa7.05□□□□□ -1.28
PEP12YOR036W YEL077CQ3E7X8 1277 aa7.05□□□□□ -1.28
PEP12YOR036W PRT1P06103 763 aaKnown RBP7.03□□□□□ -1.28
PEP12YOR036W ISM1P48526 1002 aa7.02□□□□□ -1.29
PEP12YOR036W KIC1P38692 1080 aa7.01□□□□□ -1.29
PEP12YOR036W PEX21P50091 288 aa7.01□□□□□ -1.29
PEP12YOR036W MRF1P30775 413 aaPredicted RBP7□□□□□ -1.29
PEP12YOR036W IFH1P39520 1085 aa7□□□□□ -1.29
PEP12YOR036W CSC1Q06538 782 aa6.99□□□□□ -1.29
PEP12YOR036W TFB4Q12004 338 aa6.99□□□□□ -1.29
PEP12YOR036W NUD1P32336 851 aa6.98□□□□□ -1.29
PEP12YOR036W TUM1Q08686 304 aaKnown RBP6.98□□□□□ -1.29
PEP12YOR036W ORC6P38826 435 aa6.97□□□□□ -1.29
PEP12YOR036W YPR148CQ06523 435 aa6.97□□□□□ -1.29
PEP12YOR036W REF2P42073 533 aaPredicted RBP6.96□□□□□ -1.3
PEP12YOR036W CST6P40535 587 aa6.95□□□□□ -1.3
PEP12YOR036W TY1A-DR4O74302 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-HP0C2I4 478 aaKnown RBP6.94□□□□□ -1.3
PEP12YOR036W TY1A-AP0CX57 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-PR1P0CX58 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-ORP0CX59 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-PR2P0CX60 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-DR5P0CX65 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-ER2P0CX66 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-GR3P0CX67 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-LR1P0CX68 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-MR2P0CX69 440 aa6.94□□□□□ -1.3
PEP12YOR036W AIR1P40507 360 aaKnown RBP6.94□□□□□ -1.3
PEP12YOR036W TY1A-JR2P47099 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-DR1Q03856 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-ML1Q04706 440 aaKnown RBP6.94□□□□□ -1.3
PEP12YOR036W TY1A-BRQ12217 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-NL2Q12470 440 aa6.94□□□□□ -1.3
PEP12YOR036W TY1A-GR2Q12485 440 aa6.94□□□□□ -1.3
PEP12YOR036W ERG12P07277 443 aa6.93□□□□□ -1.3
Retrieved 100 of 5,963 RNA–protein pairs in 33.4 ms