RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeastyeast

Gene PRE3, Length 648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE3YJL001W YRF1-8P0CX22 1796 aa10.81□□□□□ -0.68
PRE3YJL001W ITT1Q04638 464 aa10.8□□□□□ -0.68
PRE3YJL001W TRM732Q03496 1420 aa10.78□□□□□ -0.68
PRE3YJL001W POL1P13382 1468 aa10.76□□□□□ -0.69
PRE3YJL001W YGL015CP33199 130 aa10.75□□□□□ -0.69
PRE3YJL001W TY1B-JR2P47100 1755 aaKnown RBP10.74□□□□□ -0.69
PRE3YJL001W TY1B-ER2Q03619 1755 aa10.74□□□□□ -0.69
PRE3YJL001W TY1B-MR1Q04214 1755 aa10.74□□□□□ -0.69
PRE3YJL001W TY1B-MR2Q04670 1755 aaKnown RBP10.74□□□□□ -0.69
PRE3YJL001W TY1B-LR1Q12088 1755 aaKnown RBP10.74□□□□□ -0.69
PRE3YJL001W TY1B-NL1Q12112 1755 aa10.74□□□□□ -0.69
PRE3YJL001W TY1B-GR1Q12141 1755 aa10.74□□□□□ -0.69
PRE3YJL001W TY1B-BLQ12490 1755 aa10.74□□□□□ -0.69
PRE3YJL001W NTE1Q04958 1679 aa10.73□□□□□ -0.69
PRE3YJL001W NUP159P40477 1460 aa10.72□□□□□ -0.69
PRE3YJL001W VPS15P22219 1454 aa10.71□□□□□ -0.69
PRE3YJL001W MMS1Q06211 1407 aa10.71□□□□□ -0.69
PRE3YJL001W IRC20Q06554 1556 aa10.71□□□□□ -0.69
PRE3YJL001W YOR1P53049 1477 aa10.7□□□□□ -0.7
PRE3YJL001W SMC4Q12267 1418 aa10.7□□□□□ -0.7
PRE3YJL001W SPP41P38904 1435 aa10.69□□□□□ -0.7
PRE3YJL001W ABP1P15891 592 aaKnown RBP10.67□□□□□ -0.7
PRE3YJL001W DRS2P39524 1355 aa10.66□□□□□ -0.7
PRE3YJL001W RPO21P04050 1733 aaKnown RBP10.66□□□□□ -0.7
PRE3YJL001W STU1P38198 1513 aa10.64□□□□□ -0.71
PRE3YJL001W VTH1P40438 1549 aa10.63□□□□□ -0.71
PRE3YJL001W VTH2P40890 1549 aa10.63□□□□□ -0.71
PRE3YJL001W YFR006WP43590 535 aa10.63□□□□□ -0.71
PRE3YJL001W TSC11P40061 1430 aa10.62□□□□□ -0.71
PRE3YJL001W SPT21P35209 758 aa10.62□□□□□ -0.71
PRE3YJL001W DNF2Q12675 1612 aa10.59□□□□□ -0.71
PRE3YJL001W CDC27P38042 758 aa10.54□□□□□ -0.72
PRE3YJL001W MYO4P32492 1471 aa10.52□□□□□ -0.73
PRE3YJL001W YKR023WP36119 530 aaKnown RBP10.51□□□□□ -0.73
PRE3YJL001W NUP170P38181 1502 aa10.5□□□□□ -0.73
PRE3YJL001W SPO14P36126 1683 aa10.5□□□□□ -0.73
PRE3YJL001W SNT2P53127 1403 aa10.49□□□□□ -0.73
PRE3YJL001W SNQ2P32568 1501 aaKnown RBP10.48□□□□□ -0.73
PRE3YJL001W ULS1Q08562 1619 aa10.43□□□□□ -0.74
PRE3YJL001W DOP1Q03921 1698 aa10.41□□□□□ -0.74
PRE3YJL001W PDR12Q02785 1511 aa10.38□□□□□ -0.75
PRE3YJL001W YOR093CQ12275 1648 aa10.37□□□□□ -0.75
PRE3YJL001W RIM101P33400 625 aa10.37□□□□□ -0.75
PRE3YJL001W UBP10P53874 792 aaPredicted RBP10.34□□□□□ -0.75
PRE3YJL001W MET10P39692 1035 aa10.33□□□□□ -0.76
PRE3YJL001W TFC8Q12308 588 aa10.31□□□□□ -0.76
PRE3YJL001W GDB1Q06625 1536 aa10.31□□□□□ -0.76
PRE3YJL001W MLP2P40457 1679 aa10.31□□□□□ -0.76
PRE3YJL001W YTA7P40340 1379 aa10.3□□□□□ -0.76
PRE3YJL001W TRM3Q07527 1436 aa10.3□□□□□ -0.76
PRE3YJL001W PTP3P40048 928 aa10.29□□□□□ -0.76
PRE3YJL001W STH1P32597 1359 aa10.28□□□□□ -0.76
PRE3YJL001W IQG1Q12280 1495 aa10.28□□□□□ -0.76
PRE3YJL001W HOP09932 586 aa10.26□□□□□ -0.77
PRE3YJL001W PDR10P51533 1564 aa10.26□□□□□ -0.77
PRE3YJL001W MAP2P38174 421 aaKnown RBP10.24□□□□□ -0.77
PRE3YJL001W BUD3P25558 1636 aa10.2□□□□□ -0.78
PRE3YJL001W CHC1P22137 1653 aaKnown RBP10.19□□□□□ -0.78
PRE3YJL001W ARO1P08566 1588 aaKnown RBP10.19□□□□□ -0.78
PRE3YJL001W NUP157P40064 1391 aaKnown RBP10.19□□□□□ -0.78
PRE3YJL001W DCD1P06773 312 aa10.19□□□□□ -0.78
PRE3YJL001W RTT106P40161 455 aa10.18□□□□□ -0.78
PRE3YJL001W PDR15Q04182 1529 aaKnown RBP10.17□□□□□ -0.78
PRE3YJL001W DNF3Q12674 1656 aa10.13□□□□□ -0.79
PRE3YJL001W SSP1P38871 571 aa10.11□□□□□ -0.79
PRE3YJL001W DMA1P38823 416 aa10.1□□□□□ -0.79
PRE3YJL001W OXP1P28273 1286 aa10.07□□□□□ -0.8
PRE3YJL001W SCY1P53009 804 aa10.02□□□□□ -0.81
PRE3YJL001W SEC7P11075 2009 aaKnown RBP10□□□□□ -0.81
PRE3YJL001W YAH1Q12184 172 aaKnown RBP10□□□□□ -0.81
PRE3YJL001W TY3B-GQ99315 1547 aa9.98□□□□□ -0.81
PRE3YJL001W YBT1P32386 1661 aa9.96□□□□□ -0.81
PRE3YJL001W YIL055CP40523 627 aaKnown RBP9.96□□□□□ -0.82
PRE3YJL001W BCH2P36122 765 aa9.95□□□□□ -0.82
PRE3YJL001W SLX5P32828 619 aaKnown RBP9.93□□□□□ -0.82
PRE3YJL001W CAT8P39113 1433 aa9.92□□□□□ -0.82
PRE3YJL001W TIF4632P39936 914 aaKnown RBP9.92□□□□□ -0.82
PRE3YJL001W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.92□□□□□ -0.82not detected
PRE3YJL001W YAP3P38749 330 aa9.91□□□□□ -0.82
PRE3YJL001W YSP2Q06681 1438 aa9.9□□□□□ -0.83
PRE3YJL001W USO1P25386 1790 aa9.88□□□□□ -0.83
PRE3YJL001W BUD31P25337 157 aaPredicted RBP9.88□□□□□ -0.83
PRE3YJL001W SAS10Q12136 610 aaPredicted RBP9.88□□□□□ -0.83
PRE3YJL001W TGL3P40308 642 aa9.87□□□□□ -0.83
PRE3YJL001W GEA1P47102 1408 aaPredicted RBP9.86□□□□□ -0.83
PRE3YJL001W YLR271WQ06152 274 aa9.85□□□□□ -0.83
PRE3YJL001W MAK10Q02197 733 aa9.84□□□□□ -0.83
PRE3YJL001W BNR1P40450 1375 aa9.84□□□□□ -0.83
PRE3YJL001W IFH1P39520 1085 aa9.83□□□□□ -0.84
PRE3YJL001W TAF7Q05021 590 aa9.83□□□□□ -0.84
PRE3YJL001W RSM7P47150 247 aa9.78□□□□□ -0.84
PRE3YJL001W CKB1P43639 278 aa9.75□□□□□ -0.85
PRE3YJL001W IML1P47170 1584 aa9.75□□□□□ -0.85
PRE3YJL001W HAP1P0CE41 1502 aa9.73□□□□□ -0.85
PRE3YJL001W NUP188P52593 1655 aaKnown RBP9.72□□□□□ -0.85
PRE3YJL001W EPS1P40557 701 aa9.71□□□□□ -0.86
PRE3YJL001W TY1B-NL2Q99337 1749 aaKnown RBP9.7□□□□□ -0.86
PRE3YJL001W MGA2P40578 1113 aa9.7□□□□□ -0.86
PRE3YJL001W URN1Q06525 465 aaKnown RBP9.7□□□□□ -0.86
PRE3YJL001W BDF1P35817 686 aa9.67□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 34.8 ms