RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	DCW1	P36091	449 aa		14.57	□□□□□ -0.08
VAR1	Q0140	YEL023C	P39992	682 aa		14.57	□□□□□ -0.08
VAR1	Q0140	YDR344C	Q05510	147 aa		14.54	□□□□□ -0.08
VAR1	Q0140	RGA2	Q06407	1009 aa		14.53	□□□□□ -0.08
VAR1	Q0140	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	14.53	□□□□□ -0.08	RIP-Chip
VAR1	Q0140	DPS1	P04802	557 aa	Known RBP	14.47	□□□□□ -0.09
VAR1	Q0140	RCR1	P38212	213 aa		14.46	□□□□□ -0.09
VAR1	Q0140	SSP1	P38871	571 aa		14.42	□□□□□ -0.1
VAR1	Q0140	ELP4	Q02884	456 aa	Known RBP	14.37	□□□□□ -0.11
VAR1	Q0140	PML39	Q03760	334 aa		14.33	□□□□□ -0.12
VAR1	Q0140	MGA2	P40578	1113 aa		14.32	□□□□□ -0.12
VAR1	Q0140	TFA1	P36100	482 aa		14.19	□□□□□ -0.14
VAR1	Q0140	SRC1	Q03707	834 aa		14.19	□□□□□ -0.14
VAR1	Q0140	RGA1	P39083	1007 aa		14.17	□□□□□ -0.14
VAR1	Q0140	ARH1	P48360	493 aa		14.16	□□□□□ -0.14
VAR1	Q0140	GRE2	Q12068	342 aa	Known RBP	14.1	□□□□□ -0.15
VAR1	Q0140	MID1	P41821	548 aa		14.06	□□□□□ -0.16
VAR1	Q0140	SPT23	P35210	1082 aa		13.99	□□□□□ -0.17
VAR1	Q0140	ATH1	P48016	1211 aa		13.9	□□□□□ -0.18
VAR1	Q0140	NST1	P53935	1240 aa		13.89	□□□□□ -0.19
VAR1	Q0140	GUT1	P32190	709 aa		13.88	□□□□□ -0.19
VAR1	Q0140	PEX29	Q03370	554 aa		13.88	□□□□□ -0.19
VAR1	Q0140	HAP5	Q02516	242 aa		13.83	□□□□□ -0.2
VAR1	Q0140	MIF2	P35201	549 aa		13.82	□□□□□ -0.2
VAR1	Q0140	PTC3	P34221	468 aa	Known RBP	13.8	□□□□□ -0.2
VAR1	Q0140	EDS1	P38073	919 aa		13.77	□□□□□ -0.21
VAR1	Q0140	BNI4	P53858	892 aa		13.77	□□□□□ -0.21
VAR1	Q0140	YML082W	Q04533	649 aa	Known RBP	13.76	□□□□□ -0.21
VAR1	Q0140	SOL3	P38858	249 aa		13.75	□□□□□ -0.21
VAR1	Q0140	PTC2	P39966	464 aa	Known RBP	13.73	□□□□□ -0.21
VAR1	Q0140	MPH3	P0CE00	602 aa		13.7	□□□□□ -0.22
VAR1	Q0140	AI4	P03878	556 aa		13.69	□□□□□ -0.22
VAR1	Q0140	RAS1	P01119	309 aa		13.68	□□□□□ -0.22
VAR1	Q0140	ILV3	P39522	585 aa	Known RBP	13.66	□□□□□ -0.22
VAR1	Q0140	MAK11	P20484	414 aa	Known RBP	13.63	□□□□□ -0.23
VAR1	Q0140	MPC54	Q08550	464 aa		13.59	□□□□□ -0.23
VAR1	Q0140	NMA111	P53920	997 aa		13.49	□□□□□ -0.25
VAR1	Q0140	RAM2	P29703	316 aa		13.48	□□□□□ -0.25
VAR1	Q0140	COQ8	P27697	501 aa		13.46	□□□□□ -0.25
VAR1	Q0140	YPR015C	Q12531	247 aa		13.44	□□□□□ -0.26
VAR1	Q0140	TRK1	P12685	1235 aa		13.43	□□□□□ -0.26
VAR1	Q0140	YGR273C	P53329	174 aa		13.35	□□□□□ -0.27
VAR1	Q0140	AMS1	P22855	1083 aa		13.34	□□□□□ -0.27
VAR1	Q0140	DPL1	Q05567	589 aa		13.33	□□□□□ -0.28
VAR1	Q0140	SLI15	P38283	698 aa		13.32	□□□□□ -0.28
VAR1	Q0140	RAM1	P22007	431 aa		13.3	□□□□□ -0.28
VAR1	Q0140	YPL062W	Q02781	134 aa		13.25	□□□□□ -0.29
VAR1	Q0140	GYP1	Q08484	637 aa		13.25	□□□□□ -0.29
VAR1	Q0140	SDH2	P21801	266 aa		13.18	□□□□□ -0.3
VAR1	Q0140	ISU2	Q12056	156 aa		13.14	□□□□□ -0.31
VAR1	Q0140	NOP53	Q12080	455 aa	Known RBP	13.06	□□□□□ -0.32
VAR1	Q0140	SAS4	Q04003	481 aa		13.03	□□□□□ -0.32
VAR1	Q0140	PDR1	P12383	1068 aa		13.02	□□□□□ -0.33
VAR1	Q0140	CDC73	Q06697	393 aa		13	□□□□□ -0.33
VAR1	Q0140	YEL077C	Q3E7X8	1277 aa		12.99	□□□□□ -0.33
VAR1	Q0140	KEX1	P09620	729 aa		12.96	□□□□□ -0.33
VAR1	Q0140	GAR1	P28007	205 aa	Known RBP	12.86	□□□□□ -0.35
VAR1	Q0140	BRE2	P43132	505 aa		12.84	□□□□□ -0.35
VAR1	Q0140	MRF1	P30775	413 aa	Predicted RBP	12.82	□□□□□ -0.36
VAR1	Q0140	GBP2	P25555	427 aa	Known RBP RIP-Chip data	12.79	□□□□□ -0.36	not detected
VAR1	Q0140	AIR1	P40507	360 aa	Known RBP	12.77	□□□□□ -0.37
VAR1	Q0140	GCR2	Q01722	534 aa		12.71	□□□□□ -0.37
VAR1	Q0140	BUD20	Q08004	166 aa	Predicted RBP	12.71	□□□□□ -0.37
VAR1	Q0140	YLR326W	Q06170	240 aa	Known RBP	12.7	□□□□□ -0.38
VAR1	Q0140	CLA4	P48562	842 aa		12.68	□□□□□ -0.38
VAR1	Q0140	PRT1	P06103	763 aa	Known RBP	12.65	□□□□□ -0.38
VAR1	Q0140	UBP14	P38237	781 aa	Known RBP	12.64	□□□□□ -0.39
VAR1	Q0140	ERG12	P07277	443 aa		12.62	□□□□□ -0.39
VAR1	Q0140	PCS60	P38137	543 aa	Known RBP RIP-Chip data	12.62	□□□□□ -0.39	not detected
VAR1	Q0140	CST6	P40535	587 aa		12.62	□□□□□ -0.39
VAR1	Q0140	VHR2	P40041	505 aa		12.59	□□□□□ -0.39
VAR1	Q0140	STR2	P47164	639 aa		12.56	□□□□□ -0.4
VAR1	Q0140	RPP1B	P10622	106 aa	Known RBP	12.55	□□□□□ -0.4
VAR1	Q0140	RAD54	P32863	898 aa		12.53	□□□□□ -0.4
VAR1	Q0140	YRR1	Q12172	810 aa		12.52	□□□□□ -0.41
VAR1	Q0140	ISM1	P48526	1002 aa		12.51	□□□□□ -0.41
VAR1	Q0140	MET22	P32179	357 aa		12.49	□□□□□ -0.41
VAR1	Q0140	LAM6	Q08001	693 aa		12.48	□□□□□ -0.41
VAR1	Q0140	CDC4	P07834	779 aa		12.41	□□□□□ -0.42
VAR1	Q0140	ENV9	Q08651	330 aa		12.41	□□□□□ -0.42
VAR1	Q0140	PEX21	P50091	288 aa		12.4	□□□□□ -0.42
VAR1	Q0140	NUD1	P32336	851 aa		12.39	□□□□□ -0.43
VAR1	Q0140	FRK1	Q03002	865 aa	Predicted RBP	12.38	□□□□□ -0.43
VAR1	Q0140	TY1A-DR4	O74302	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-H	P0C2I4	478 aa	Known RBP	12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-A	P0CX57	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-PR1	P0CX58	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-OR	P0CX59	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-PR2	P0CX60	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-DR5	P0CX65	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-ER2	P0CX66	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-GR3	P0CX67	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-LR1	P0CX68	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-MR2	P0CX69	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	GAP1	P19145	602 aa	Predicted RBP	12.31	□□□□□ -0.44
VAR1	Q0140	SPT16	P32558	1035 aa	Known RBP	12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-JR2	P47099	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-DR1	Q03856	440 aa		12.31	□□□□□ -0.44
VAR1	Q0140	TY1A-ML1	Q04706	440 aa	Known RBP	12.31	□□□□□ -0.44
VAR1	Q0140	TUM1	Q08686	304 aa	Known RBP	12.31	□□□□□ -0.44

Retrieved 100 of 5,963 RNA–protein pairs in 45.6 ms