RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, human

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-218	ENST00000635120	NCL	P19338	710 aa	Known RBP	12.03	□□□□□ -0.48
CSMD1-218	ENST00000635120	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.02	□□□□□ -0.49
CSMD1-218	ENST00000635120	PTMA	P06454	111 aa	Known RBP	12.01	□□□□□ -0.49
CSMD1-218	ENST00000635120	TNNT2	P45379	298 aa	Predicted RBP	12.01	□□□□□ -0.49
CSMD1-218	ENST00000635120	GOLGA6L22	H0YM25	854 aa		12.01	□□□□□ -0.49
CSMD1-218	ENST00000635120	SENP3	Q9H4L4	574 aa	Predicted RBP	12	□□□□□ -0.49
CSMD1-218	ENST00000635120	TPRN	Q4KMQ1	711 aa		11.99	□□□□□ -0.49
CSMD1-218	ENST00000635120	PLEKHG5	O94827	1062 aa		11.97	□□□□□ -0.49
CSMD1-218	ENST00000635120	MTUS2	Q5JR59	1369 aa		11.96	□□□□□ -0.49
CSMD1-218	ENST00000635120	ZRSR1	Q15695	479 aa	Known RBP	11.96	□□□□□ -0.5
CSMD1-218	ENST00000635120	ZBTB7C	A1YPR0	619 aa		11.96	□□□□□ -0.5
CSMD1-218	ENST00000635120	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.95	□□□□□ -0.5
CSMD1-218	ENST00000635120	C14orf37	Q86TY3	774 aa		11.94	□□□□□ -0.5
CSMD1-218	ENST00000635120	SENP3-EIF4A1	A0A087X0R7	540 aa		11.94	□□□□□ -0.5
CSMD1-218	ENST00000635120	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.93	□□□□□ -0.5
CSMD1-218	ENST00000635120	CASC1	Q6TDU7	716 aa		11.93	□□□□□ -0.5
CSMD1-218	ENST00000635120	FTSJ3	Q8IY81	847 aa	Known RBP	11.93	□□□□□ -0.5
CSMD1-218	ENST00000635120	CLIP1	P30622	1438 aa		11.93	□□□□□ -0.5
CSMD1-218	ENST00000635120	NPM1	P06748	294 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
CSMD1-218	ENST00000635120	LAS1L	Q9Y4W2	734 aa	Known RBP	11.92	□□□□□ -0.5
CSMD1-218	ENST00000635120	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
CSMD1-218	ENST00000635120	RRP7BP	Q9NSQ0	103 aa		11.89	□□□□□ -0.51
CSMD1-218	ENST00000635120	TULP1	O00294	542 aa	Predicted RBP	11.89	□□□□□ -0.51
CSMD1-218	ENST00000635120	TSPY4	P0CV99	314 aa		11.89	□□□□□ -0.51
CSMD1-218	ENST00000635120	TSPY10	P0CW01	314 aa		11.89	□□□□□ -0.51
CSMD1-218	ENST00000635120	ERICH6B	Q5W0A0	696 aa		11.88	□□□□□ -0.51
CSMD1-218	ENST00000635120	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.88	□□□□□ -0.51
CSMD1-218	ENST00000635120	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.87	□□□□□ -0.51
CSMD1-218	ENST00000635120	PPP1R15A	O75807	674 aa	Predicted RBP	11.87	□□□□□ -0.51
CSMD1-218	ENST00000635120	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.85	□□□□□ -0.51
CSMD1-218	ENST00000635120	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.85	□□□□□ -0.51
CSMD1-218	ENST00000635120	RGS3	P49796	1198 aa		11.84	□□□□□ -0.51
CSMD1-218	ENST00000635120	CFAP53	Q96M91	514 aa		11.84	□□□□□ -0.51
CSMD1-218	ENST00000635120	TAOK2	Q9UL54	1235 aa		11.83	□□□□□ -0.51
CSMD1-218	ENST00000635120	PPM1G	O15355	546 aa	Predicted RBP	11.83	□□□□□ -0.52
CSMD1-218	ENST00000635120	KNSTRN	Q9Y448	316 aa		11.83	□□□□□ -0.52
CSMD1-218	ENST00000635120	NOP58	Q9Y2X3	529 aa	Known RBP	11.83	□□□□□ -0.52
CSMD1-218	ENST00000635120	MYO15B	Q96JP2	1530 aa		11.81	□□□□□ -0.52
CSMD1-218	ENST00000635120	KAT6B	Q8WYB5	2073 aa		11.81	□□□□□ -0.52
CSMD1-218	ENST00000635120	GOLGA6L6	A8MZA4	724 aa		11.81	□□□□□ -0.52
CSMD1-218	ENST00000635120	HSP90AB1	P08238	724 aa	Known RBP	11.8	□□□□□ -0.52
CSMD1-218	ENST00000635120	PLCB2	Q00722	1185 aa		11.8	□□□□□ -0.52
CSMD1-218	ENST00000635120	RGL3	Q3MIN7	710 aa		11.8	□□□□□ -0.52
CSMD1-218	ENST00000635120	CEP162	Q5TB80	1403 aa		11.79	□□□□□ -0.52
CSMD1-218	ENST00000635120	RSF1	Q96T23	1441 aa	Predicted RBP	11.79	□□□□□ -0.52
CSMD1-218	ENST00000635120	NEUROD2	Q15784	382 aa		11.78	□□□□□ -0.52
CSMD1-218	ENST00000635120	GOLGA3	Q08378	1498 aa		11.78	□□□□□ -0.52
CSMD1-218	ENST00000635120	FGD1	P98174	961 aa		11.78	□□□□□ -0.52
CSMD1-218	ENST00000635120	DEK	P35659	375 aa	Known RBP	11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	FRAT1	Q92837	279 aa	Predicted RBP	11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	CHAF1A	Q13111	956 aa	Predicted RBP	11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	MAPK8IP3	Q9UPT6	1336 aa		11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	CDCA8	Q53HL2	280 aa		11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	PPP4R2	Q9NY27	417 aa		11.76	□□□□□ -0.53
CSMD1-218	ENST00000635120	HAP1	P54257	671 aa	Predicted RBP	11.75	□□□□□ -0.53
CSMD1-218	ENST00000635120	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.75	□□□□□ -0.53
CSMD1-218	ENST00000635120	OS9	Q13438	667 aa	Predicted RBP	11.75	□□□□□ -0.53
CSMD1-218	ENST00000635120	KCNJ4	P48050	445 aa		11.75	□□□□□ -0.53
CSMD1-218	ENST00000635120	NRDC	O43847	1150 aa		11.74	□□□□□ -0.53
CSMD1-218	ENST00000635120	KCNH8	Q96L42	1107 aa		11.73	□□□□□ -0.53
CSMD1-218	ENST00000635120	HSCB	Q8IWL3	235 aa		11.72	□□□□□ -0.53
CSMD1-218	ENST00000635120	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.72	□□□□□ -0.53
CSMD1-218	ENST00000635120	CARD11	Q9BXL7	1154 aa		11.72	□□□□□ -0.53
CSMD1-218	ENST00000635120	B4GALNT3	Q6L9W6	998 aa		11.72	□□□□□ -0.53
CSMD1-218	ENST00000635120	NPHP1	O15259	732 aa		11.71	□□□□□ -0.54
CSMD1-218	ENST00000635120	CC2D1B	Q5T0F9	858 aa	Known RBP	11.7	□□□□□ -0.54
CSMD1-218	ENST00000635120	GOLGA6L4	A6NEF3	574 aa		11.7	□□□□□ -0.54
CSMD1-218	ENST00000635120	SPRYD3	Q8NCJ5	442 aa		11.7	□□□□□ -0.54
CSMD1-218	ENST00000635120	MSN	P26038	577 aa	Known RBP	11.69	□□□□□ -0.54
CSMD1-218	ENST00000635120	DRC7	Q8IY82	874 aa		11.69	□□□□□ -0.54
CSMD1-218	ENST00000635120	CHMP4B	Q9H444	224 aa	Known RBP	11.68	□□□□□ -0.54
CSMD1-218	ENST00000635120	CLSTN1	O94985	981 aa		11.67	□□□□□ -0.54
CSMD1-218	ENST00000635120	L1TD1	Q5T7N2	865 aa	Known RBP	11.67	□□□□□ -0.54
CSMD1-218	ENST00000635120	NUDC	Q9Y266	331 aa		11.67	□□□□□ -0.54
CSMD1-218	ENST00000635120	GOLGA2	Q08379	1002 aa		11.66	□□□□□ -0.54
CSMD1-218	ENST00000635120	LMOD2	Q6P5Q4	547 aa		11.66	□□□□□ -0.54
CSMD1-218	ENST00000635120	POGK	Q9P215	609 aa		11.66	□□□□□ -0.54
CSMD1-218	ENST00000635120	U2SURP	O15042	1029 aa	Known RBP	11.66	□□□□□ -0.54
CSMD1-218	ENST00000635120	EEA1	Q15075	1411 aa		11.66	□□□□□ -0.54
CSMD1-218	ENST00000635120	MS4A1	P11836	297 aa		11.65	□□□□□ -0.54
CSMD1-218	ENST00000635120	PLEKHD1	A6NEE1	506 aa		11.65	□□□□□ -0.54
CSMD1-218	ENST00000635120	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.65	□□□□□ -0.55
CSMD1-218	ENST00000635120	RB1CC1	Q8TDY2	1594 aa		11.64	□□□□□ -0.55
CSMD1-218	ENST00000635120	ARID3A	Q99856	593 aa		11.64	□□□□□ -0.55
CSMD1-218	ENST00000635120	NCBP3	Q53F19	620 aa	Known RBP	11.63	□□□□□ -0.55
CSMD1-218	ENST00000635120	MCC	P23508	829 aa		11.63	□□□□□ -0.55
CSMD1-218	ENST00000635120	CEP164	Q9UPV0	1460 aa		11.62	□□□□□ -0.55
CSMD1-218	ENST00000635120	EIF4G1	Q04637	1599 aa	Known RBP	11.61	□□□□□ -0.55
CSMD1-218	ENST00000635120	GNL2	Q13823	731 aa	Known RBP	11.61	□□□□□ -0.55
CSMD1-218	ENST00000635120	SIN3A	Q96ST3	1273 aa		11.6	□□□□□ -0.55
CSMD1-218	ENST00000635120	KIF27	Q86VH2	1401 aa		11.59	□□□□□ -0.55
CSMD1-218	ENST00000635120	PNN	Q9H307	717 aa	Known RBP	11.59	□□□□□ -0.55
CSMD1-218	ENST00000635120	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.58	□□□□□ -0.56
CSMD1-218	ENST00000635120	ISY1	Q9ULR0	285 aa	Known RBP	11.58	□□□□□ -0.56
CSMD1-218	ENST00000635120	NOC3L	Q8WTT2	800 aa	Known RBP	11.57	□□□□□ -0.56
CSMD1-218	ENST00000635120	GZF1	Q9H116	711 aa	Predicted RBP	11.57	□□□□□ -0.56
CSMD1-218	ENST00000635120	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.57	□□□□□ -0.56
CSMD1-218	ENST00000635120	APBB1	O00213	710 aa		11.57	□□□□□ -0.56
CSMD1-218	ENST00000635120	KIAA1211	Q6ZU35	1233 aa		11.56	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms