RNA–Protein interactions for RNA: ENST00000622697.4

GABRB3-215, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 5 BASIC

Gene GABRB3, Length 5,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-215ENST00000622697 NBR1Q14596 966 aa21.82■■□□□ 1.08
GABRB3-215ENST00000622697 NEFMP07197 916 aa21.81■■□□□ 1.08
GABRB3-215ENST00000622697 TSPY4P0CV99 314 aa21.8■■□□□ 1.08
GABRB3-215ENST00000622697 TSPY10P0CW01 314 aa21.8■■□□□ 1.08
GABRB3-215ENST00000622697 KIF27Q86VH2 1401 aa21.77■■□□□ 1.07
GABRB3-215ENST00000622697 CHMP7Q8WUX9 453 aaPredicted RBP21.76■■□□□ 1.07
GABRB3-215ENST00000622697 BAZ1AQ9NRL2 1556 aaPredicted RBP21.76■■□□□ 1.07
GABRB3-215ENST00000622697 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
GABRB3-215ENST00000622697 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
GABRB3-215ENST00000622697 SUPT16HQ9Y5B9 1047 aaKnown RBP21.71■■□□□ 1.07
GABRB3-215ENST00000622697 SENP3Q9H4L4 574 aaPredicted RBP21.69■■□□□ 1.06
GABRB3-215ENST00000622697 CCDC88BA6NC98 1476 aa21.67■■□□□ 1.06
GABRB3-215ENST00000622697 RGL3Q3MIN7 710 aa21.67■■□□□ 1.06
GABRB3-215ENST00000622697 WDR43Q15061 677 aaKnown RBP eCLIP21.67■■□□□ 1.06
GABRB3-215ENST00000622697 KANK4Q5T7N3 995 aaPredicted RBP21.64■■□□□ 1.05
GABRB3-215ENST00000622697 STAG3Q9UJ98 1225 aa21.63■■□□□ 1.05
GABRB3-215ENST00000622697 CCNB3Q8WWL7 1395 aa21.62■■□□□ 1.05
GABRB3-215ENST00000622697 PLPPR3Q6T4P5 718 aa21.62■■□□□ 1.05
GABRB3-215ENST00000622697 KCNH8Q96L42 1107 aa21.62■■□□□ 1.05
GABRB3-215ENST00000622697 CFDP1Q9UEE9 299 aaPredicted RBP21.56■■□□□ 1.04
GABRB3-215ENST00000622697 PLEKHD1A6NEE1 506 aa21.54■■□□□ 1.04
GABRB3-215ENST00000622697 NPM1P06748 294 aaKnown RBP eCLIP21.53■■□□□ 1.04
GABRB3-215ENST00000622697 HSP90AA1P07900 732 aaKnown RBP21.53■■□□□ 1.04
GABRB3-215ENST00000622697 ARXQ96QS3 562 aa21.53■■□□□ 1.04
GABRB3-215ENST00000622697 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.53■■□□□ 1.04
GABRB3-215ENST00000622697 UPF2Q9HAU5 1272 aaKnown RBP21.53■■□□□ 1.04
GABRB3-215ENST00000622697 VPS8Q8N3P4 1428 aa21.51■■□□□ 1.03
GABRB3-215ENST00000622697 EIF5BO60841 1220 aaKnown RBP21.51■■□□□ 1.03
GABRB3-215ENST00000622697 ESF1Q9H501 851 aaKnown RBP21.51■■□□□ 1.03
GABRB3-215ENST00000622697 CARD11Q9BXL7 1154 aa21.5■■□□□ 1.03
GABRB3-215ENST00000622697 CUX2O14529 1486 aa21.49■■□□□ 1.03
GABRB3-215ENST00000622697 CARMIL1Q5VZK9 1371 aa21.49■■□□□ 1.03
GABRB3-215ENST00000622697 WIZO95785 1651 aa21.48■■□□□ 1.03
GABRB3-215ENST00000622697 ANP32EQ9BTT0 268 aa21.42■■□□□ 1.02
GABRB3-215ENST00000622697 FOXD1Q16676 465 aa21.4■■□□□ 1.02
GABRB3-215ENST00000622697 B4GALNT3Q6L9W6 998 aa21.4■■□□□ 1.02
GABRB3-215ENST00000622697 SETD5Q9C0A6 1442 aa21.38■■□□□ 1.01
GABRB3-215ENST00000622697 FHAD1B1AJZ9 1412 aa21.38■■□□□ 1.01
GABRB3-215ENST00000622697 RAB3GAP2Q9H2M9 1393 aa21.35■■□□□ 1.01
GABRB3-215ENST00000622697 PPP4R2Q9NY27 417 aa21.34■■□□□ 1.01
GABRB3-215ENST00000622697 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
GABRB3-215ENST00000622697 CC2D1BQ5T0F9 858 aaKnown RBP21.34■■□□□ 1.01
GABRB3-215ENST00000622697 KNSTRNQ9Y448 316 aa21.33■■□□□ 1
GABRB3-215ENST00000622697 HSPA5P11021 654 aaKnown RBP21.33■■□□□ 1
GABRB3-215ENST00000622697 NEUROD2Q15784 382 aa21.31■■□□□ 1
GABRB3-215ENST00000622697 RUSC2Q8N2Y8 1516 aa21.31■■□□□ 1
GABRB3-215ENST00000622697 DCAF11Q8TEB1 546 aa21.29■■□□□ 1
GABRB3-215ENST00000622697 ANP32BQ92688 251 aaKnown RBP21.28■■□□□ 1
GABRB3-215ENST00000622697 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
GABRB3-215ENST00000622697 TOP2AP11388 1531 aaKnown RBP21.25■□□□□ 0.99
GABRB3-215ENST00000622697 TNNT2P45379 298 aaPredicted RBP21.24■□□□□ 0.99
GABRB3-215ENST00000622697 RAPGEF2Q9Y4G8 1499 aa21.24■□□□□ 0.99
GABRB3-215ENST00000622697 CCER2I3L3R5 266 aa21.23■□□□□ 0.99
GABRB3-215ENST00000622697 TIMELESSQ9UNS1 1208 aa21.23■□□□□ 0.99
GABRB3-215ENST00000622697 PLEKHG5O94827 1062 aa21.23■□□□□ 0.99
GABRB3-215ENST00000622697 LAS1LQ9Y4W2 734 aaKnown RBP21.23■□□□□ 0.99
GABRB3-215ENST00000622697 RGS3P49796 1198 aa21.21■□□□□ 0.99
GABRB3-215ENST00000622697 PPM1GO15355 546 aaPredicted RBP21.2■□□□□ 0.98
GABRB3-215ENST00000622697 RBM19Q9Y4C8 960 aaKnown RBP21.19■□□□□ 0.98
GABRB3-215ENST00000622697 DDRGK1Q96HY6 314 aa21.18■□□□□ 0.98
GABRB3-215ENST00000622697 TDRD9Q8NDG6 1382 aaKnown RBP21.17■□□□□ 0.98
GABRB3-215ENST00000622697 CDCA8Q53HL2 280 aa21.16■□□□□ 0.98
GABRB3-215ENST00000622697 PPP1R15AO75807 674 aaPredicted RBP21.16■□□□□ 0.98
GABRB3-215ENST00000622697 PKD2Q13563 968 aa21.15■□□□□ 0.98
GABRB3-215ENST00000622697 FRAT1Q92837 279 aaPredicted RBP21.15■□□□□ 0.98
GABRB3-215ENST00000622697 MPHOSPH9Q99550 1183 aa21.14■□□□□ 0.97
GABRB3-215ENST00000622697 MYH16Q9H6N6 1097 aa21.13■□□□□ 0.97
GABRB3-215ENST00000622697 NOP58Q9Y2X3 529 aaKnown RBP21.13■□□□□ 0.97
GABRB3-215ENST00000622697 CFAP53Q96M91 514 aa21.12■□□□□ 0.97
GABRB3-215ENST00000622697 ZBTB7CA1YPR0 619 aa21.11■□□□□ 0.97
GABRB3-215ENST00000622697 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
GABRB3-215ENST00000622697 FHOD3Q2V2M9 1422 aa21.1■□□□□ 0.97
GABRB3-215ENST00000622697 BECN1Q14457 450 aa21.1■□□□□ 0.97
GABRB3-215ENST00000622697 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
GABRB3-215ENST00000622697 DHX57Q6P158 1386 aaKnown RBP21.09■□□□□ 0.97
GABRB3-215ENST00000622697 FTSJ3Q8IY81 847 aaKnown RBP21.08■□□□□ 0.97
GABRB3-215ENST00000622697 TSHZ2Q9NRE2 1034 aa21.07■□□□□ 0.96
GABRB3-215ENST00000622697 TMF1P82094 1093 aa21.06■□□□□ 0.96
GABRB3-215ENST00000622697 C14orf37Q86TY3 774 aa21.06■□□□□ 0.96
GABRB3-215ENST00000622697 L3MBTL2Q969R5 705 aa21.05■□□□□ 0.96
GABRB3-215ENST00000622697 RTN4Q9NQC3 1192 aaKnown RBP21.05■□□□□ 0.96
GABRB3-215ENST00000622697 U2SURPO15042 1029 aaKnown RBP21■□□□□ 0.95
GABRB3-215ENST00000622697 FMN1Q68DA7 1419 aa21■□□□□ 0.95
GABRB3-215ENST00000622697 MAPK8IP3Q9UPT6 1336 aa20.98■□□□□ 0.95
GABRB3-215ENST00000622697 SMARCA4P51532 1647 aa20.98■□□□□ 0.95
GABRB3-215ENST00000622697 SAFB2Q14151 953 aaKnown RBP eCLIP20.97■□□□□ 0.95
GABRB3-215ENST00000622697 POGKQ9P215 609 aa20.97■□□□□ 0.95
GABRB3-215ENST00000622697 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
GABRB3-215ENST00000622697 NUP155O75694 1391 aa20.96■□□□□ 0.95
GABRB3-215ENST00000622697 NCLP19338 710 aaKnown RBP20.93■□□□□ 0.94
GABRB3-215ENST00000622697 TPRNQ4KMQ1 711 aa20.93■□□□□ 0.94
GABRB3-215ENST00000622697 NUDCQ9Y266 331 aa20.92■□□□□ 0.94
GABRB3-215ENST00000622697 ROCK2O75116 1388 aaKnown RBP20.92■□□□□ 0.94
GABRB3-215ENST00000622697 KTN1Q86UP2 1357 aaKnown RBP20.9■□□□□ 0.94
GABRB3-215ENST00000622697 RCAN3Q9UKA8 241 aa20.89■□□□□ 0.94
GABRB3-215ENST00000622697 CADPSQ9ULU8 1353 aa20.89■□□□□ 0.94
GABRB3-215ENST00000622697 ARID4BQ4LE39 1312 aaPredicted RBP20.89■□□□□ 0.94
GABRB3-215ENST00000622697 HNRNPMP52272 730 aaKnown RBP eCLIP20.88■□□□□ 0.93
GABRB3-215ENST00000622697 DEKP35659 375 aaKnown RBP20.88■□□□□ 0.93
GABRB3-215ENST00000622697 MORC1Q86VD1 984 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms