RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PEG3Q9GZU2 1588 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 AMER1Q5JTC6 1135 aaPredicted RBP11.25□□□□□ -0.61
VPS11-209ENST00000622309 HOMEZQ8IX15 550 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
VPS11-209ENST00000622309 HAP1P54257 671 aaPredicted RBP11.24□□□□□ -0.61
VPS11-209ENST00000622309 KIF21AQ7Z4S6 1674 aa11.23□□□□□ -0.61
VPS11-209ENST00000622309 TAOK2Q9UL54 1235 aa11.22□□□□□ -0.61
VPS11-209ENST00000622309 DHX37Q8IY37 1157 aaKnown RBP11.22□□□□□ -0.61
VPS11-209ENST00000622309 BCL11BQ9C0K0 894 aaPredicted RBP11.21□□□□□ -0.61
VPS11-209ENST00000622309 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
VPS11-209ENST00000622309 MRC2Q9UBG0 1479 aa11.2□□□□□ -0.62
VPS11-209ENST00000622309 ITGAEP38570 1179 aa11.2□□□□□ -0.62
VPS11-209ENST00000622309 WDR62O43379 1518 aa11.17□□□□□ -0.62
VPS11-209ENST00000622309 CADPSQ9ULU8 1353 aa11.17□□□□□ -0.62
VPS11-209ENST00000622309 TPRNQ4KMQ1 711 aa11.16□□□□□ -0.62
VPS11-209ENST00000622309 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
VPS11-209ENST00000622309 CDK11AQ9UQ88 783 aaPredicted RBP11.15□□□□□ -0.62
VPS11-209ENST00000622309 NBR1Q14596 966 aa11.13□□□□□ -0.63
VPS11-209ENST00000622309 NPM2Q86SE8 214 aaKnown RBP11.13□□□□□ -0.63
VPS11-209ENST00000622309 CCDC88BA6NC98 1476 aa11.12□□□□□ -0.63
VPS11-209ENST00000622309 C14orf37Q86TY3 774 aa11.11□□□□□ -0.63
VPS11-209ENST00000622309 ABCC8Q09428 1581 aa11.1□□□□□ -0.63
VPS11-209ENST00000622309 IL27Q8NEV9 243 aa11.1□□□□□ -0.63
VPS11-209ENST00000622309 RTL5Q5HYW3 569 aaPredicted RBP11.09□□□□□ -0.63
VPS11-209ENST00000622309 CEP164Q9UPV0 1460 aa11.09□□□□□ -0.63
VPS11-209ENST00000622309 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
VPS11-209ENST00000622309 HNRNPUL2Q1KMD3 747 aaKnown RBP11.04□□□□□ -0.64
VPS11-209ENST00000622309 CHMP4AQ9BY43 222 aa11.04□□□□□ -0.64
VPS11-209ENST00000622309 NOP58Q9Y2X3 529 aaKnown RBP11.03□□□□□ -0.64
VPS11-209ENST00000622309 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.64
VPS11-209ENST00000622309 KCNH8Q96L42 1107 aa11.02□□□□□ -0.64
VPS11-209ENST00000622309 IRX6P78412 446 aaPredicted RBP11□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3CA6NJZ7 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3BA6NNM3 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 RIMBP3Q9UFD9 1639 aa10.99□□□□□ -0.65
VPS11-209ENST00000622309 PAXIP1Q6ZW49 1069 aaPredicted RBP10.97□□□□□ -0.65
VPS11-209ENST00000622309 SOGA1O94964 1423 aa10.97□□□□□ -0.65
VPS11-209ENST00000622309 WRNQ14191 1432 aaPredicted RBP eCLIP10.97□□□□□ -0.65
VPS11-209ENST00000622309 CFTRP13569 1480 aa10.96□□□□□ -0.65
VPS11-209ENST00000622309 UBTFP17480 764 aaKnown RBP10.96□□□□□ -0.66
VPS11-209ENST00000622309 GLIPR1L2Q4G1C9 344 aa10.95□□□□□ -0.66
VPS11-209ENST00000622309 ARHGEF11O15085 1522 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 RUSC2Q8N2Y8 1516 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 TRIM52Q96A61 297 aa10.93□□□□□ -0.66
VPS11-209ENST00000622309 URB2Q14146 1524 aaKnown RBP10.93□□□□□ -0.66
VPS11-209ENST00000622309 PAK3O75914 559 aaPredicted RBP10.92□□□□□ -0.66
VPS11-209ENST00000622309 FGD1P98174 961 aa10.9□□□□□ -0.66
VPS11-209ENST00000622309 SAMD1Q6SPF0 538 aaPredicted RBP10.9□□□□□ -0.66
VPS11-209ENST00000622309 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
VPS11-209ENST00000622309 ZBTB47Q9UFB7 747 aaPredicted RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 TRHP20396 242 aaPredicted RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 ANP32AP39687 249 aaKnown RBP10.87□□□□□ -0.67
VPS11-209ENST00000622309 CYB5RLQ6IPT4 315 aa10.86□□□□□ -0.67
VPS11-209ENST00000622309 CEP162Q5TB80 1403 aa10.84□□□□□ -0.67
VPS11-209ENST00000622309 RSPH6AQ9H0K4 717 aa10.84□□□□□ -0.67
VPS11-209ENST00000622309 PPP4R2Q9NY27 417 aa10.83□□□□□ -0.67
VPS11-209ENST00000622309 C11orf95C9JLR9 678 aaPredicted RBP10.83□□□□□ -0.68
VPS11-209ENST00000622309 VSIG10Q8N0Z9 540 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 IPO9Q96P70 1041 aaKnown RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 ZNF608Q9ULD9 1512 aaPredicted RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 PRDM2Q13029 1718 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 DDX10Q13206 875 aaKnown RBP10.82□□□□□ -0.68
VPS11-209ENST00000622309 ZMYND15Q9H091 742 aa10.82□□□□□ -0.68
VPS11-209ENST00000622309 CFAP44Q96MT7 982 aa10.81□□□□□ -0.68
VPS11-209ENST00000622309 SYNJ1O43426 1573 aa10.81□□□□□ -0.68
VPS11-209ENST00000622309 TAF7LQ5H9L4 462 aa10.8□□□□□ -0.68
VPS11-209ENST00000622309 WASHC2AQ641Q2 1341 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 ARAP1Q96P48 1450 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 CCER2I3L3R5 266 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 BRPF3Q9ULD4 1205 aa10.79□□□□□ -0.68
VPS11-209ENST00000622309 ANP32CO43423 234 aa10.78□□□□□ -0.68
VPS11-209ENST00000622309 NEFMP07197 916 aa10.78□□□□□ -0.68
VPS11-209ENST00000622309 EIF4G3O43432 1585 aaKnown RBP10.78□□□□□ -0.68
VPS11-209ENST00000622309 RBM10P98175 930 aaKnown RBP10.77□□□□□ -0.68
VPS11-209ENST00000622309 USP35Q9P2H5 1018 aa10.77□□□□□ -0.68
VPS11-209ENST00000622309 TOPBP1Q92547 1522 aa10.77□□□□□ -0.68
VPS11-209ENST00000622309 WASHC2CQ9Y4E1 1318 aa10.75□□□□□ -0.69
VPS11-209ENST00000622309 B4GALNT3Q6L9W6 998 aa10.75□□□□□ -0.69
VPS11-209ENST00000622309 DHX57Q6P158 1386 aaKnown RBP10.75□□□□□ -0.69
VPS11-209ENST00000622309 CHD1O14646 1710 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 TNIKQ9UKE5 1360 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 AAMPQ13685 434 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 PPP6R1Q9UPN7 881 aa10.74□□□□□ -0.69
VPS11-209ENST00000622309 DNMBPQ6XZF7 1577 aa10.73□□□□□ -0.69
VPS11-209ENST00000622309 HNRNPUQ00839 825 aaKnown RBP eCLIP10.73□□□□□ -0.69
VPS11-209ENST00000622309 EEA1Q15075 1411 aa10.72□□□□□ -0.69
VPS11-209ENST00000622309 LAS1LQ9Y4W2 734 aaKnown RBP10.72□□□□□ -0.69
VPS11-209ENST00000622309 GOLGA3Q08378 1498 aa10.72□□□□□ -0.69
VPS11-209ENST00000622309 BRD2P25440 801 aaKnown RBP10.71□□□□□ -0.69
VPS11-209ENST00000622309 FBLN2P98095 1184 aa10.71□□□□□ -0.7
VPS11-209ENST00000622309 PPM1GO15355 546 aaPredicted RBP10.69□□□□□ -0.7
VPS11-209ENST00000622309 AQRO60306 1485 aaKnown RBP eCLIP10.69□□□□□ -0.76e-11■■■■□ 25.1
VPS11-209ENST00000622309 TARBP1Q13395 1621 aaKnown RBP10.69□□□□□ -0.7
VPS11-209ENST00000622309 GSE1Q14687 1217 aa10.68□□□□□ -0.7
VPS11-209ENST00000622309 RAPGEF2Q9Y4G8 1499 aa10.68□□□□□ -0.7
VPS11-209ENST00000622309 FAM43AQ8N2R8 423 aa10.67□□□□□ -0.7
VPS11-209ENST00000622309 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
VPS11-209ENST00000622309 PPP1R15AO75807 674 aaPredicted RBP10.66□□□□□ -0.7
VPS11-209ENST00000622309 CLIP1P30622 1438 aa10.65□□□□□ -0.7
VPS11-209ENST00000622309 CLASP1Q7Z460 1538 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms